Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF726 and GFF727 are separated by 89 nucleotides GFF727 and GFF728 are separated by 86 nucleotides GFF728 and GFF729 are separated by 25 nucleotides
GFF726 - Enoyl-CoA hydratase (EC 4.2.1.17), at 405,787 to 406,629
GFF726
GFF727 - hypothetical protein, at 406,719 to 406,997
GFF727
GFF728 - DNA polymerase IV (EC 2.7.7.7), at 407,084 to 408,325
GFF728
GFF729 - L-lactate dehydrogenase (EC 1.1.2.3), at 408,351 to 409,502
GFF729
Position (kb) 407
408
409 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 406.364 kb on + strand, within GFF726 at 406.365 kb on - strand, within GFF726 at 406.365 kb on - strand, within GFF726 at 406.365 kb on - strand, within GFF726 at 406.670 kb on + strand at 406.671 kb on - strand at 406.726 kb on + strand at 406.789 kb on + strand, within GFF727 at 406.789 kb on + strand, within GFF727 at 406.790 kb on - strand, within GFF727 at 406.790 kb on - strand, within GFF727 at 406.790 kb on - strand, within GFF727 at 406.790 kb on - strand, within GFF727 at 406.916 kb on - strand, within GFF727 at 407.295 kb on + strand, within GFF728 at 407.296 kb on - strand, within GFF728 at 407.328 kb on + strand, within GFF728 at 407.520 kb on + strand, within GFF728 at 407.520 kb on + strand, within GFF728 at 407.520 kb on + strand, within GFF728 at 407.520 kb on + strand, within GFF728 at 407.520 kb on + strand, within GFF728 at 407.521 kb on - strand, within GFF728 at 407.521 kb on - strand, within GFF728 at 407.521 kb on - strand, within GFF728 at 407.862 kb on + strand, within GFF728 at 407.862 kb on + strand, within GFF728 at 407.862 kb on + strand, within GFF728 at 407.863 kb on - strand, within GFF728 at 407.863 kb on - strand, within GFF728 at 408.076 kb on - strand, within GFF728 at 408.147 kb on + strand, within GFF728 at 408.147 kb on + strand, within GFF728 at 408.147 kb on + strand, within GFF728 at 408.325 kb on + strand at 408.326 kb on - strand at 408.361 kb on + strand at 408.361 kb on + strand at 408.500 kb on - strand, within GFF729 at 408.500 kb on - strand, within GFF729 at 408.520 kb on + strand, within GFF729 at 408.520 kb on + strand, within GFF729 at 408.521 kb on - strand, within GFF729 at 409.114 kb on + strand, within GFF729 at 409.115 kb on - strand, within GFF729
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 406,364 + GFF726 0.68 +0.4 406,365 - GFF726 0.69 +0.2 406,365 - GFF726 0.69 +1.4 406,365 - GFF726 0.69 +1.0 406,670 + +0.1 406,671 - +0.2 406,726 + -0.2 406,789 + GFF727 0.25 -3.0 406,789 + GFF727 0.25 +2.5 406,790 - GFF727 0.25 +1.1 406,790 - GFF727 0.25 -1.6 406,790 - GFF727 0.25 -0.0 406,790 - GFF727 0.25 -0.1 406,916 - GFF727 0.71 +0.2 407,295 + GFF728 0.17 +0.6 407,296 - GFF728 0.17 +1.0 407,328 + GFF728 0.20 -0.4 407,520 + GFF728 0.35 +1.4 407,520 + GFF728 0.35 +1.7 407,520 + GFF728 0.35 +0.1 407,520 + GFF728 0.35 -0.2 407,520 + GFF728 0.35 +1.5 407,521 - GFF728 0.35 -0.1 407,521 - GFF728 0.35 -1.1 407,521 - GFF728 0.35 +0.3 407,862 + GFF728 0.63 -0.6 407,862 + GFF728 0.63 +0.1 407,862 + GFF728 0.63 +0.8 407,863 - GFF728 0.63 +0.4 407,863 - GFF728 0.63 +0.5 408,076 - GFF728 0.80 +0.5 408,147 + GFF728 0.86 +0.4 408,147 + GFF728 0.86 +0.1 408,147 + GFF728 0.86 +0.5 408,325 + -0.2 408,326 - -0.5 408,361 + -0.2 408,361 + +0.9 408,500 - GFF729 0.13 -1.5 408,500 - GFF729 0.13 -0.8 408,520 + GFF729 0.15 -0.2 408,520 + GFF729 0.15 +0.3 408,521 - GFF729 0.15 -0.6 409,114 + GFF729 0.66 +1.5 409,115 - GFF729 0.66 +0.6
Or see this region's nucleotide sequence