Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF724 and GFF725 are separated by 120 nucleotides GFF725 and GFF726 are separated by 9 nucleotides GFF726 and GFF727 are separated by 89 nucleotides GFF727 and GFF728 are separated by 86 nucleotides
GFF724 - Ornithine cyclodeaminase (EC 4.3.1.12), at 404,152 to 405,231
GFF724
GFF725 - Transcriptional regulator, AsnC family, at 405,352 to 405,777
GFF725
GFF726 - Enoyl-CoA hydratase (EC 4.2.1.17), at 405,787 to 406,629
GFF726
GFF727 - hypothetical protein, at 406,719 to 406,997
GFF727
GFF728 - DNA polymerase IV (EC 2.7.7.7), at 407,084 to 408,325
GFF728
Position (kb) 405
406
407 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 404.996 kb on + strand, within GFF724 at 404.996 kb on + strand, within GFF724 at 404.997 kb on - strand, within GFF724 at 404.997 kb on - strand, within GFF724 at 404.997 kb on - strand, within GFF724 at 404.997 kb on - strand, within GFF724 at 404.997 kb on - strand, within GFF724 at 405.008 kb on + strand, within GFF724 at 405.009 kb on - strand, within GFF724 at 405.009 kb on - strand, within GFF724 at 405.105 kb on - strand, within GFF724 at 405.280 kb on + strand at 405.280 kb on + strand at 405.763 kb on + strand at 405.764 kb on - strand at 405.775 kb on + strand at 406.075 kb on + strand, within GFF726 at 406.075 kb on + strand, within GFF726 at 406.076 kb on + strand, within GFF726 at 406.076 kb on + strand, within GFF726 at 406.076 kb on + strand, within GFF726 at 406.077 kb on - strand, within GFF726 at 406.077 kb on - strand, within GFF726 at 406.364 kb on + strand, within GFF726 at 406.365 kb on - strand, within GFF726 at 406.365 kb on - strand, within GFF726 at 406.365 kb on - strand, within GFF726 at 406.670 kb on + strand at 406.671 kb on - strand at 406.726 kb on + strand at 406.789 kb on + strand, within GFF727 at 406.789 kb on + strand, within GFF727 at 406.790 kb on - strand, within GFF727 at 406.790 kb on - strand, within GFF727 at 406.790 kb on - strand, within GFF727 at 406.790 kb on - strand, within GFF727 at 406.916 kb on - strand, within GFF727 at 407.295 kb on + strand, within GFF728 at 407.296 kb on - strand, within GFF728 at 407.328 kb on + strand, within GFF728 at 407.520 kb on + strand, within GFF728 at 407.520 kb on + strand, within GFF728 at 407.520 kb on + strand, within GFF728 at 407.520 kb on + strand, within GFF728 at 407.520 kb on + strand, within GFF728 at 407.521 kb on - strand, within GFF728 at 407.521 kb on - strand, within GFF728 at 407.521 kb on - strand, within GFF728
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 404,996 + GFF724 0.78 -2.5 404,996 + GFF724 0.78 -3.3 404,997 - GFF724 0.78 -5.8 404,997 - GFF724 0.78 -3.4 404,997 - GFF724 0.78 -3.6 404,997 - GFF724 0.78 -2.0 404,997 - GFF724 0.78 -4.5 405,008 + GFF724 0.79 +0.1 405,009 - GFF724 0.79 -3.4 405,009 - GFF724 0.79 -4.2 405,105 - GFF724 0.88 -3.9 405,280 + -5.4 405,280 + -5.8 405,763 + -2.4 405,764 - -2.5 405,775 + -1.3 406,075 + GFF726 0.34 +0.1 406,075 + GFF726 0.34 -0.2 406,076 + GFF726 0.34 +0.2 406,076 + GFF726 0.34 +1.2 406,076 + GFF726 0.34 -0.4 406,077 - GFF726 0.34 +0.7 406,077 - GFF726 0.34 +0.1 406,364 + GFF726 0.68 +0.4 406,365 - GFF726 0.69 +0.2 406,365 - GFF726 0.69 +1.4 406,365 - GFF726 0.69 +1.0 406,670 + +0.1 406,671 - +0.2 406,726 + -0.2 406,789 + GFF727 0.25 -3.0 406,789 + GFF727 0.25 +2.5 406,790 - GFF727 0.25 +1.1 406,790 - GFF727 0.25 -1.6 406,790 - GFF727 0.25 -0.0 406,790 - GFF727 0.25 -0.1 406,916 - GFF727 0.71 +0.2 407,295 + GFF728 0.17 +0.6 407,296 - GFF728 0.17 +1.0 407,328 + GFF728 0.20 -0.4 407,520 + GFF728 0.35 +1.4 407,520 + GFF728 0.35 +1.7 407,520 + GFF728 0.35 +0.1 407,520 + GFF728 0.35 -0.2 407,520 + GFF728 0.35 +1.5 407,521 - GFF728 0.35 -0.1 407,521 - GFF728 0.35 -1.1 407,521 - GFF728 0.35 +0.3
Or see this region's nucleotide sequence