Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF716 and GFF717 are separated by 305 nucleotides GFF717 and GFF718 are separated by 111 nucleotides GFF718 and GFF719 are separated by 15 nucleotides GFF719 and GFF720 are separated by 51 nucleotides
GFF716 - Glyoxalase family protein, at 396,987 to 397,601
GFF716
GFF717 - Rubrerythrin, at 397,907 to 398,329
GFF717
GFF718 - Fe-S oxidoreductase-like protein in Rubrerythrin cluster, at 398,441 to 399,799
GFF718
GFF719 - Hypothetical protein i Rubrerythrin cluster, at 399,815 to 400,405
GFF719
GFF720 - UPF0246 protein YaaA, at 400,457 to 401,275
GFF720
Position (kb) 398
399
400 Strain fitness (log2 ratio) -2
-1
0
1
2 at 397.456 kb on + strand, within GFF716 at 397.457 kb on - strand, within GFF716 at 397.477 kb on + strand, within GFF716 at 397.478 kb on - strand, within GFF716 at 397.505 kb on - strand, within GFF716 at 397.541 kb on - strand at 397.547 kb on - strand at 397.547 kb on - strand at 397.670 kb on - strand at 397.677 kb on + strand at 397.678 kb on - strand at 397.762 kb on - strand at 397.762 kb on - strand at 397.762 kb on - strand at 397.794 kb on + strand at 397.794 kb on + strand at 397.794 kb on + strand at 397.794 kb on + strand at 397.795 kb on - strand at 397.821 kb on + strand at 397.821 kb on + strand at 397.822 kb on - strand at 397.822 kb on - strand at 397.822 kb on - strand at 397.822 kb on - strand at 397.902 kb on + strand at 397.902 kb on + strand at 397.903 kb on - strand at 397.903 kb on - strand at 397.903 kb on - strand at 397.986 kb on - strand, within GFF717 at 397.990 kb on + strand, within GFF717 at 397.991 kb on + strand, within GFF717 at 397.991 kb on + strand, within GFF717 at 398.186 kb on + strand, within GFF717 at 398.186 kb on + strand, within GFF717 at 398.186 kb on + strand, within GFF717 at 398.187 kb on - strand, within GFF717 at 398.187 kb on - strand, within GFF717 at 398.199 kb on - strand, within GFF717 at 398.199 kb on - strand, within GFF717 at 398.199 kb on - strand, within GFF717 at 398.199 kb on - strand, within GFF717 at 398.687 kb on + strand, within GFF718 at 398.687 kb on + strand, within GFF718 at 398.687 kb on + strand, within GFF718 at 398.705 kb on + strand, within GFF718 at 398.705 kb on + strand, within GFF718 at 398.706 kb on - strand, within GFF718 at 399.068 kb on + strand, within GFF718 at 399.069 kb on - strand, within GFF718 at 399.069 kb on - strand, within GFF718 at 399.069 kb on - strand, within GFF718 at 399.077 kb on + strand, within GFF718 at 399.137 kb on + strand, within GFF718 at 399.137 kb on + strand, within GFF718 at 399.137 kb on + strand, within GFF718 at 399.137 kb on + strand, within GFF718 at 399.137 kb on + strand, within GFF718 at 399.138 kb on - strand, within GFF718 at 399.138 kb on - strand, within GFF718 at 399.245 kb on + strand, within GFF718 at 399.246 kb on - strand, within GFF718 at 399.449 kb on + strand, within GFF718 at 399.450 kb on - strand, within GFF718 at 399.797 kb on + strand at 399.798 kb on - strand at 399.798 kb on - strand at 399.866 kb on + strand at 399.980 kb on + strand, within GFF719 at 400.106 kb on + strand, within GFF719 at 400.106 kb on + strand, within GFF719 at 400.106 kb on + strand, within GFF719 at 400.200 kb on - strand, within GFF719 at 400.200 kb on - strand, within GFF719 at 400.200 kb on - strand, within GFF719 at 400.403 kb on + strand at 400.404 kb on - strand at 400.404 kb on - strand at 400.535 kb on + strand at 400.760 kb on + strand, within GFF720 at 400.761 kb on - strand, within GFF720 at 400.761 kb on - strand, within GFF720 at 400.761 kb on - strand, within GFF720
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 397,456 + GFF716 0.76 +0.6 397,457 - GFF716 0.76 -0.6 397,477 + GFF716 0.80 +0.3 397,478 - GFF716 0.80 +0.1 397,505 - GFF716 0.84 -0.0 397,541 - -1.1 397,547 - -0.8 397,547 - -0.5 397,670 - -0.3 397,677 + +0.0 397,678 - -0.0 397,762 - -0.0 397,762 - +0.3 397,762 - +0.6 397,794 + +0.9 397,794 + +0.5 397,794 + -0.1 397,794 + +0.7 397,795 - -0.2 397,821 + -1.9 397,821 + -0.0 397,822 - -0.9 397,822 - -0.3 397,822 - -0.9 397,822 - +0.1 397,902 + -0.2 397,902 + +0.1 397,903 - -1.3 397,903 - -0.8 397,903 - +0.0 397,986 - GFF717 0.19 +0.3 397,990 + GFF717 0.20 -0.0 397,991 + GFF717 0.20 +1.3 397,991 + GFF717 0.20 +0.3 398,186 + GFF717 0.66 +0.5 398,186 + GFF717 0.66 -0.1 398,186 + GFF717 0.66 +0.5 398,187 - GFF717 0.66 +0.9 398,187 - GFF717 0.66 +0.3 398,199 - GFF717 0.69 +0.2 398,199 - GFF717 0.69 +0.1 398,199 - GFF717 0.69 +0.5 398,199 - GFF717 0.69 +0.4 398,687 + GFF718 0.18 +0.1 398,687 + GFF718 0.18 -0.3 398,687 + GFF718 0.18 -0.2 398,705 + GFF718 0.19 +0.2 398,705 + GFF718 0.19 +0.8 398,706 - GFF718 0.19 +0.2 399,068 + GFF718 0.46 -0.2 399,069 - GFF718 0.46 +1.0 399,069 - GFF718 0.46 +0.7 399,069 - GFF718 0.46 -0.8 399,077 + GFF718 0.47 +0.8 399,137 + GFF718 0.51 +0.0 399,137 + GFF718 0.51 +0.4 399,137 + GFF718 0.51 +0.6 399,137 + GFF718 0.51 -0.5 399,137 + GFF718 0.51 +0.7 399,138 - GFF718 0.51 -0.6 399,138 - GFF718 0.51 -0.3 399,245 + GFF718 0.59 +0.2 399,246 - GFF718 0.59 +1.1 399,449 + GFF718 0.74 -0.8 399,450 - GFF718 0.74 -1.2 399,797 + +0.5 399,798 - +0.3 399,798 - +0.3 399,866 + +0.4 399,980 + GFF719 0.28 -0.1 400,106 + GFF719 0.49 -0.3 400,106 + GFF719 0.49 -1.6 400,106 + GFF719 0.49 -0.0 400,200 - GFF719 0.65 +1.9 400,200 - GFF719 0.65 -0.2 400,200 - GFF719 0.65 +0.9 400,403 + -0.1 400,404 - +0.7 400,404 - -0.5 400,535 + +0.5 400,760 + GFF720 0.37 +0.8 400,761 - GFF720 0.37 +0.1 400,761 - GFF720 0.37 -0.2 400,761 - GFF720 0.37 -0.4
Or see this region's nucleotide sequence