Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF675 and GFF676 are separated by 118 nucleotides GFF676 and GFF677 are separated by 51 nucleotides GFF677 and GFF678 are separated by 80 nucleotides
GFF675 - ATPase associated with various cellular activities, AAA_5, at 360,115 to 360,957
GFF675
GFF676 - Putative periplasmic cytochrome type-C oxidoreductase signal peptide protein (EC 1.-.-.-), at 361,076 to 361,732
GFF676
GFF677 - FIG00433688: hypothetical protein, at 361,784 to 362,218
GFF677
GFF678 - Acetyl-CoA acetyltransferase (EC 2.3.1.9) @ Beta-ketoadipyl CoA thiolase (EC 2.3.1.-), at 362,299 to 363,501
GFF678
Position (kb) 361
362
363 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 360.932 kb on + strand at 360.932 kb on + strand at 360.932 kb on + strand at 360.932 kb on + strand at 360.932 kb on + strand at 360.932 kb on + strand at 360.932 kb on + strand at 360.932 kb on + strand at 360.933 kb on - strand at 360.933 kb on - strand at 360.933 kb on - strand at 360.933 kb on - strand at 360.933 kb on - strand at 361.014 kb on + strand at 361.014 kb on + strand at 361.014 kb on + strand at 361.014 kb on + strand at 361.015 kb on - strand at 361.015 kb on - strand at 361.015 kb on - strand at 361.015 kb on - strand at 361.016 kb on + strand at 361.016 kb on + strand at 361.017 kb on - strand at 361.017 kb on - strand at 361.017 kb on - strand at 361.017 kb on - strand at 361.017 kb on - strand at 361.017 kb on - strand at 361.017 kb on - strand at 361.018 kb on + strand at 361.018 kb on + strand at 361.018 kb on + strand at 361.018 kb on + strand at 361.018 kb on + strand at 361.018 kb on + strand at 361.019 kb on - strand at 361.019 kb on - strand at 361.280 kb on + strand, within GFF676 at 361.280 kb on + strand, within GFF676 at 361.281 kb on - strand, within GFF676 at 361.281 kb on - strand, within GFF676 at 361.305 kb on - strand, within GFF676 at 361.343 kb on - strand, within GFF676 at 361.391 kb on + strand, within GFF676 at 361.391 kb on + strand, within GFF676 at 361.391 kb on + strand, within GFF676 at 361.392 kb on - strand, within GFF676 at 361.523 kb on + strand, within GFF676 at 361.523 kb on + strand, within GFF676 at 361.523 kb on + strand, within GFF676 at 361.524 kb on - strand, within GFF676 at 361.577 kb on + strand, within GFF676 at 361.577 kb on + strand, within GFF676 at 361.578 kb on - strand, within GFF676 at 361.643 kb on + strand, within GFF676 at 361.643 kb on + strand, within GFF676 at 361.643 kb on + strand, within GFF676 at 361.643 kb on + strand, within GFF676 at 361.644 kb on - strand, within GFF676 at 361.676 kb on + strand at 361.676 kb on + strand at 361.676 kb on + strand at 361.677 kb on - strand at 361.677 kb on - strand at 361.677 kb on - strand at 361.677 kb on - strand at 361.677 kb on - strand at 361.677 kb on - strand at 361.677 kb on - strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.822 kb on - strand at 361.822 kb on - strand at 362.091 kb on + strand, within GFF677 at 362.092 kb on - strand, within GFF677 at 362.267 kb on + strand at 362.267 kb on + strand at 362.268 kb on - strand at 362.719 kb on + strand, within GFF678 at 362.719 kb on + strand, within GFF678 at 362.720 kb on - strand, within GFF678 at 362.720 kb on - strand, within GFF678 at 362.770 kb on + strand, within GFF678 at 362.771 kb on - strand, within GFF678 at 362.771 kb on - strand, within GFF678 at 362.818 kb on + strand, within GFF678 at 362.819 kb on - strand, within GFF678
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 360,932 + -0.1 360,932 + +0.3 360,932 + -0.1 360,932 + +0.1 360,932 + +0.5 360,932 + +0.2 360,932 + -0.1 360,932 + +0.1 360,933 - -0.6 360,933 - +0.2 360,933 - -0.6 360,933 - -0.2 360,933 - +0.6 361,014 + -0.2 361,014 + -0.1 361,014 + +0.2 361,014 + +0.1 361,015 - -0.7 361,015 - +0.4 361,015 - -0.3 361,015 - -1.1 361,016 + +0.1 361,016 + -1.8 361,017 - -0.5 361,017 - +0.0 361,017 - -0.4 361,017 - -0.9 361,017 - -1.4 361,017 - +0.3 361,017 - -0.3 361,018 + -0.1 361,018 + -1.0 361,018 + -1.1 361,018 + -0.4 361,018 + -0.8 361,018 + -0.9 361,019 - -0.9 361,019 - -1.5 361,280 + GFF676 0.31 -1.6 361,280 + GFF676 0.31 -1.4 361,281 - GFF676 0.31 -1.8 361,281 - GFF676 0.31 -0.3 361,305 - GFF676 0.35 -0.9 361,343 - GFF676 0.41 -1.9 361,391 + GFF676 0.48 -1.6 361,391 + GFF676 0.48 -0.6 361,391 + GFF676 0.48 -2.6 361,392 - GFF676 0.48 -1.6 361,523 + GFF676 0.68 -2.6 361,523 + GFF676 0.68 -2.2 361,523 + GFF676 0.68 -0.7 361,524 - GFF676 0.68 +0.2 361,577 + GFF676 0.76 -0.4 361,577 + GFF676 0.76 -1.6 361,578 - GFF676 0.76 -2.2 361,643 + GFF676 0.86 -0.7 361,643 + GFF676 0.86 -0.8 361,643 + GFF676 0.86 -3.2 361,643 + GFF676 0.86 -0.3 361,644 - GFF676 0.86 -1.2 361,676 + -1.4 361,676 + -1.5 361,676 + -2.5 361,677 - -2.2 361,677 - -1.7 361,677 - -1.8 361,677 - -2.6 361,677 - -0.3 361,677 - -0.1 361,677 - -2.6 361,821 + -0.6 361,821 + -0.1 361,821 + -0.7 361,821 + -0.1 361,821 + -0.2 361,821 + -0.7 361,821 + +0.9 361,821 + +1.4 361,821 + -0.3 361,822 - -0.2 361,822 - +0.4 362,091 + GFF677 0.71 +0.8 362,092 - GFF677 0.71 +0.1 362,267 + +0.2 362,267 + +0.2 362,268 - +0.1 362,719 + GFF678 0.35 -0.3 362,719 + GFF678 0.35 +0.2 362,720 - GFF678 0.35 -0.2 362,720 - GFF678 0.35 +0.5 362,770 + GFF678 0.39 -0.3 362,771 - GFF678 0.39 +0.7 362,771 - GFF678 0.39 +0.2 362,818 + GFF678 0.43 +1.0 362,819 - GFF678 0.43 +1.1
Or see this region's nucleotide sequence