Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF670 and GFF671 are separated by 7 nucleotides GFF671 and GFF672 are separated by 7 nucleotides
GFF670 - putative exported protein, at 351,897 to 356,024
GFF670
GFF671 - Surface antigen (D15) precursor, at 356,032 to 358,053
GFF671
GFF672 - carbon monoxide dehydrogenase E protein, at 358,061 to 359,248
GFF672
Position (kb) 356
357
358
359 Strain fitness (log2 ratio) -2
-1
0
1 at 355.480 kb on + strand, within GFF670 at 356.087 kb on + strand at 356.087 kb on + strand at 356.088 kb on - strand at 356.126 kb on + strand at 356.280 kb on - strand, within GFF671 at 356.534 kb on + strand, within GFF671 at 356.534 kb on + strand, within GFF671 at 356.591 kb on + strand, within GFF671 at 356.591 kb on + strand, within GFF671 at 356.592 kb on - strand, within GFF671 at 356.592 kb on - strand, within GFF671 at 356.622 kb on - strand, within GFF671 at 356.672 kb on + strand, within GFF671 at 356.672 kb on + strand, within GFF671 at 356.672 kb on + strand, within GFF671 at 356.672 kb on + strand, within GFF671 at 356.673 kb on - strand, within GFF671 at 356.751 kb on - strand, within GFF671 at 356.759 kb on - strand, within GFF671 at 356.760 kb on - strand, within GFF671 at 356.775 kb on - strand, within GFF671 at 357.135 kb on - strand, within GFF671 at 357.135 kb on - strand, within GFF671 at 357.137 kb on + strand, within GFF671 at 357.138 kb on - strand, within GFF671 at 357.189 kb on - strand, within GFF671 at 357.248 kb on + strand, within GFF671 at 357.314 kb on + strand, within GFF671 at 357.315 kb on - strand, within GFF671 at 357.315 kb on - strand, within GFF671 at 357.901 kb on + strand at 357.902 kb on - strand at 358.009 kb on + strand at 358.009 kb on + strand at 358.010 kb on - strand at 358.062 kb on + strand at 358.063 kb on - strand at 358.113 kb on + strand at 358.113 kb on + strand at 358.114 kb on - strand at 358.114 kb on - strand at 358.161 kb on + strand at 358.162 kb on - strand at 358.260 kb on + strand, within GFF672 at 358.261 kb on - strand, within GFF672 at 358.286 kb on + strand, within GFF672 at 358.332 kb on + strand, within GFF672 at 358.333 kb on - strand, within GFF672 at 358.344 kb on + strand, within GFF672 at 358.344 kb on + strand, within GFF672 at 358.345 kb on - strand, within GFF672 at 358.417 kb on - strand, within GFF672 at 358.434 kb on + strand, within GFF672 at 358.434 kb on + strand, within GFF672 at 358.435 kb on - strand, within GFF672 at 358.435 kb on - strand, within GFF672 at 358.437 kb on + strand, within GFF672 at 358.720 kb on - strand, within GFF672 at 358.720 kb on - strand, within GFF672 at 359.038 kb on - strand, within GFF672
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 355,480 + GFF670 0.87 +0.2 356,087 + -0.4 356,087 + +0.9 356,088 - +0.4 356,126 + -0.4 356,280 - GFF671 0.12 +0.5 356,534 + GFF671 0.25 -0.2 356,534 + GFF671 0.25 +0.8 356,591 + GFF671 0.28 -1.1 356,591 + GFF671 0.28 +0.4 356,592 - GFF671 0.28 -0.2 356,592 - GFF671 0.28 -2.1 356,622 - GFF671 0.29 -0.4 356,672 + GFF671 0.32 +0.5 356,672 + GFF671 0.32 +1.1 356,672 + GFF671 0.32 +0.7 356,672 + GFF671 0.32 -0.2 356,673 - GFF671 0.32 +0.8 356,751 - GFF671 0.36 -0.8 356,759 - GFF671 0.36 -0.4 356,760 - GFF671 0.36 +0.9 356,775 - GFF671 0.37 +0.3 357,135 - GFF671 0.55 +0.2 357,135 - GFF671 0.55 -0.2 357,137 + GFF671 0.55 +0.2 357,138 - GFF671 0.55 +0.6 357,189 - GFF671 0.57 -0.8 357,248 + GFF671 0.60 +0.7 357,314 + GFF671 0.63 -0.1 357,315 - GFF671 0.63 +0.3 357,315 - GFF671 0.63 +0.2 357,901 + -0.2 357,902 - +0.7 358,009 + -0.7 358,009 + -0.3 358,010 - -0.1 358,062 + -0.4 358,063 - -0.2 358,113 + +0.8 358,113 + +1.1 358,114 - +0.1 358,114 - +0.1 358,161 + +0.3 358,162 - -0.2 358,260 + GFF672 0.17 +0.0 358,261 - GFF672 0.17 -0.2 358,286 + GFF672 0.19 -0.6 358,332 + GFF672 0.23 +0.7 358,333 - GFF672 0.23 +0.3 358,344 + GFF672 0.24 -1.2 358,344 + GFF672 0.24 -0.6 358,345 - GFF672 0.24 +0.4 358,417 - GFF672 0.30 -0.2 358,434 + GFF672 0.31 +0.2 358,434 + GFF672 0.31 -1.4 358,435 - GFF672 0.31 -0.6 358,435 - GFF672 0.31 -0.3 358,437 + GFF672 0.32 -0.3 358,720 - GFF672 0.55 +0.1 358,720 - GFF672 0.55 -0.4 359,038 - GFF672 0.82 +0.9
Or see this region's nucleotide sequence