Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5696

Experiment: Ying_Others16 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5694 and GFF5695 overlap by 4 nucleotidesGFF5695 and GFF5696 are separated by 2 nucleotidesGFF5696 and GFF5697 are separated by 4 nucleotidesGFF5697 and GFF5698 overlap by 4 nucleotides GFF5694 - putative alcohol dehydrogenase related to anaerobic 3-hydroxybenzoate metabolism, at 2,718,598 to 2,719,377 GFF5694 GFF5695 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 2,719,374 to 2,720,123 GFF5695 GFF5696 - PROBABLE TRANSMEMBRANE PROTEIN, at 2,720,126 to 2,721,022 GFF5696 GFF5697 - Creatinine amidohydrolase (EC 3.5.2.10), at 2,721,027 to 2,721,806 GFF5697 GFF5698 - Isochorismatase (EC 3.3.2.1), at 2,721,803 to 2,722,426 GFF5698 Position (kb) 2720 2721 2722Strain fitness (log2 ratio) -1 0 1at 2719.827 kb on + strand, within GFF5695at 2719.828 kb on - strand, within GFF5695at 2720.420 kb on + strand, within GFF5696at 2721.070 kb on - strandat 2721.478 kb on - strand, within GFF5697at 2721.586 kb on - strand, within GFF5697

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2
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2,719,827 + GFF5695 0.60 -0.3
2,719,828 - GFF5695 0.61 +0.2
2,720,420 + GFF5696 0.33 +0.9
2,721,070 - -0.9
2,721,478 - GFF5697 0.58 -0.4
2,721,586 - GFF5697 0.72 +0.0

Or see this region's nucleotide sequence