Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5560

Experiment: Ying_Others16 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 2
2,570,972	-		GFF5559	0.87	+0.7
2,571,100	+				-0.6
2,571,100	+				-1.2
2,571,187	+				+0.6
2,571,202	+				-2.3
2,571,287	-				-0.4
2,571,814	+		GFF5560	0.47	-0.1
2,571,815	-		GFF5560	0.47	-0.7
2,572,064	+		GFF5560	0.70	+0.4
2,572,064	+		GFF5560	0.70	-1.0
2,572,065	-		GFF5560	0.70	-0.0
2,572,181	-		GFF5560	0.80	-0.3
2,572,689	+		GFF5561	0.15	-0.6
2,572,689	+		GFF5561	0.15	-0.5
2,572,759	-		GFF5561	0.18	-1.3
2,573,376	+		GFF5561	0.50	-0.7
2,573,377	-		GFF5561	0.50	-1.3