Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5358

Experiment: Ying_Others16 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 2
2,359,641	-				-0.9
2,359,715	+		GFF5357	0.11	+0.7
2,359,715	+		GFF5357	0.11	-0.4
2,359,716	-		GFF5357	0.11	+0.1
2,360,103	-		GFF5357	0.54	+0.5
2,360,103	-		GFF5357	0.54	+0.2
2,360,103	-		GFF5357	0.54	+0.4
2,360,103	-		GFF5357	0.54	+0.1
2,360,713	-				-0.1
2,360,929	+		GFF5358	0.20	+1.2
2,360,944	+		GFF5358	0.20	+0.6
2,360,945	-		GFF5358	0.20	-0.2
2,361,601	+		GFF5358	0.52	+0.8
2,361,602	-		GFF5358	0.52	+0.5
2,361,602	-		GFF5358	0.52	+0.0
2,362,084	+		GFF5358	0.76	+0.0
2,362,085	-		GFF5358	0.76	+0.0
2,362,445	-				-0.2
2,363,221	+				+1.4
2,363,221	+				+0.4
2,363,222	-				+0.6
2,363,222	-				-0.2
2,363,338	-				+0.0
2,363,338	-				-0.1