Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF518 and GFF519 are separated by 279 nucleotides GFF519 and GFF520 are separated by 113 nucleotides GFF520 and GFF521 are separated by 1 nucleotides
GFF518 - Transcriptional regulator, at 185,924 to 186,841
GFF518
GFF519 - Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4), at 187,121 to 188,020
GFF519
GFF520 - Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4), at 188,134 to 188,889
GFF520
GFF521 - Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4), at 188,891 to 189,562
GFF521
Position (kb) 187
188
189 Strain fitness (log2 ratio) -1
0
1
2 at 186.443 kb on + strand, within GFF518 at 186.443 kb on + strand, within GFF518 at 186.443 kb on + strand, within GFF518 at 186.444 kb on - strand, within GFF518 at 186.444 kb on - strand, within GFF518 at 186.522 kb on - strand, within GFF518 at 186.536 kb on + strand, within GFF518 at 186.755 kb on + strand at 186.855 kb on + strand at 186.862 kb on + strand at 186.863 kb on - strand at 186.901 kb on + strand at 186.964 kb on + strand at 187.073 kb on + strand at 187.260 kb on - strand, within GFF519 at 187.260 kb on - strand, within GFF519 at 187.281 kb on - strand, within GFF519 at 187.364 kb on + strand, within GFF519 at 187.364 kb on + strand, within GFF519 at 187.487 kb on + strand, within GFF519 at 187.488 kb on - strand, within GFF519 at 187.643 kb on + strand, within GFF519 at 187.761 kb on - strand, within GFF519 at 188.007 kb on - strand at 188.007 kb on - strand at 188.007 kb on - strand at 188.018 kb on + strand at 188.018 kb on + strand at 188.133 kb on + strand at 188.222 kb on - strand, within GFF520 at 188.222 kb on - strand, within GFF520 at 188.222 kb on - strand, within GFF520 at 188.222 kb on - strand, within GFF520 at 188.222 kb on - strand, within GFF520 at 188.313 kb on + strand, within GFF520 at 188.561 kb on - strand, within GFF520 at 188.597 kb on - strand, within GFF520 at 188.599 kb on + strand, within GFF520 at 188.600 kb on - strand, within GFF520 at 188.768 kb on - strand, within GFF520 at 188.768 kb on - strand, within GFF520 at 188.789 kb on - strand, within GFF520 at 188.849 kb on + strand at 188.919 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 186,443 + GFF518 0.57 -0.3 186,443 + GFF518 0.57 +0.1 186,443 + GFF518 0.57 -0.3 186,444 - GFF518 0.57 +0.4 186,444 - GFF518 0.57 -0.1 186,522 - GFF518 0.65 -0.3 186,536 + GFF518 0.67 -0.3 186,755 + +0.9 186,855 + +0.4 186,862 + +0.5 186,863 - +0.5 186,901 + +0.1 186,964 + -0.0 187,073 + -0.1 187,260 - GFF519 0.15 -0.9 187,260 - GFF519 0.15 +0.5 187,281 - GFF519 0.18 +0.8 187,364 + GFF519 0.27 -0.2 187,364 + GFF519 0.27 +0.2 187,487 + GFF519 0.41 +0.1 187,488 - GFF519 0.41 +0.9 187,643 + GFF519 0.58 +0.8 187,761 - GFF519 0.71 +2.2 188,007 - -0.2 188,007 - +0.8 188,007 - -0.1 188,018 + +0.2 188,018 + +0.1 188,133 + +0.5 188,222 - GFF520 0.12 -0.1 188,222 - GFF520 0.12 +1.1 188,222 - GFF520 0.12 +0.1 188,222 - GFF520 0.12 -0.4 188,222 - GFF520 0.12 +0.2 188,313 + GFF520 0.24 +0.1 188,561 - GFF520 0.56 -0.3 188,597 - GFF520 0.61 -0.7 188,599 + GFF520 0.62 +0.1 188,600 - GFF520 0.62 -0.4 188,768 - GFF520 0.84 -0.2 188,768 - GFF520 0.84 -0.3 188,789 - GFF520 0.87 +1.3 188,849 + +0.5 188,919 - -0.2
Or see this region's nucleotide sequence