Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5121

Experiment: Ying_Others16 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 2
2,131,003	+		GFF5119	0.73	+0.6
2,131,948	-				+0.6
2,132,033	+				+0.2
2,132,033	+				+0.5
2,132,630	+		GFF5121	0.74	+0.6
2,132,677	-		GFF5121	0.80	+0.7
2,132,998	+				-0.1
2,132,999	-				+0.5
2,133,191	-		GFF5122	0.25	-0.6
2,133,200	-		GFF5122	0.25	+1.2
2,133,250	+		GFF5122	0.30	+0.3
2,133,250	+		GFF5122	0.30	+0.1
2,133,251	-		GFF5122	0.30	-0.6
2,133,251	-		GFF5122	0.30	-0.1
2,133,253	+		GFF5122	0.30	+0.2
2,133,254	-		GFF5122	0.30	+0.2
2,133,256	+		GFF5122	0.30	+0.3
2,133,256	+		GFF5122	0.30	+0.1
2,133,257	-		GFF5122	0.30	-0.8
2,133,289	+		GFF5122	0.33	+0.2
2,133,289	+		GFF5122	0.33	-1.8
2,133,289	+		GFF5122	0.33	+0.4
2,133,412	+		GFF5122	0.43	+0.1
2,133,412	+		GFF5122	0.43	+0.7
2,133,412	+		GFF5122	0.43	+0.2
2,133,412	+		GFF5122	0.43	+1.0
2,133,412	+		GFF5122	0.43	+0.8
2,133,412	+		GFF5122	0.43	-1.1
2,133,412	+		GFF5122	0.43	+0.1
2,133,413	-		GFF5122	0.43	-0.0
2,133,413	-		GFF5122	0.43	-0.4
2,133,413	-		GFF5122	0.43	-1.2
2,133,413	-		GFF5122	0.43	-0.6
2,133,413	-		GFF5122	0.43	-0.2
2,133,413	-		GFF5122	0.43	+0.2
2,133,413	-		GFF5122	0.43	+0.1
2,133,664	+		GFF5122	0.64	-0.4
2,133,664	+		GFF5122	0.64	+0.1
2,133,664	+		GFF5122	0.64	-0.1
2,133,664	+		GFF5122	0.64	-0.3
2,133,664	+		GFF5122	0.64	+0.6
2,133,665	-		GFF5122	0.64	-0.2
2,133,665	-		GFF5122	0.64	+1.0
2,133,665	-		GFF5122	0.64	-0.3
2,133,665	-		GFF5122	0.64	-0.1
2,133,730	+		GFF5122	0.69	-0.4
2,133,731	-		GFF5122	0.69	+0.2