Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4936

Experiment: Ying_Others16 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4934 and GFF4935 are separated by 8 nucleotidesGFF4935 and GFF4936 are separated by 3 nucleotidesGFF4936 and GFF4937 are separated by 40 nucleotides GFF4934 - Transcription-repair coupling factor, at 1,949,430 to 1,952,912 GFF4934 GFF4935 - Phosphoserine phosphatase (EC 3.1.3.3), at 1,952,921 to 1,953,646 GFF4935 GFF4936 - Translation initiation factor SUI1-related protein, at 1,953,650 to 1,954,015 GFF4936 GFF4937 - ATP-dependent RNA helicase RhlE, at 1,954,056 to 1,955,300 GFF4937 Position (kb) 1953 1954 1955Strain fitness (log2 ratio) -1 0 1at 1953.982 kb on - strandat 1954.040 kb on + strandat 1954.040 kb on + strandat 1954.040 kb on + strandat 1954.041 kb on - strandat 1954.869 kb on + strand, within GFF4937

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2
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1,953,982 - +0.3
1,954,040 + +0.3
1,954,040 + +0.0
1,954,040 + +0.1
1,954,041 - -0.4
1,954,869 + GFF4937 0.65 +0.0

Or see this region's nucleotide sequence