Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF478 and GFF479 overlap by 4 nucleotides GFF479 and GFF480 are separated by 49 nucleotides GFF480 and GFF481 are separated by 45 nucleotides
GFF478 - Acyclic terpenes utilization regulator AtuR, TetR family, at 142,234 to 142,920
GFF478
GFF479 - Citronellol and citronellal dehydrogenase, at 142,917 to 143,816
GFF479
GFF480 - Geranyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.5), at 143,866 to 145,413
GFF480
GFF481 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4), at 145,459 to 146,631
GFF481
Position (kb) 143
144
145
146 Strain fitness (log2 ratio) -1
0
1 at 143.235 kb on + strand, within GFF479 at 143.235 kb on + strand, within GFF479 at 143.329 kb on - strand, within GFF479 at 144.545 kb on - strand, within GFF480 at 144.911 kb on - strand, within GFF480 at 144.931 kb on + strand, within GFF480 at 144.932 kb on - strand, within GFF480 at 144.932 kb on - strand, within GFF480 at 144.932 kb on - strand, within GFF480 at 145.061 kb on - strand, within GFF480 at 145.412 kb on - strand at 145.507 kb on + strand at 145.508 kb on - strand at 145.652 kb on - strand, within GFF481 at 145.652 kb on - strand, within GFF481 at 145.657 kb on + strand, within GFF481 at 145.657 kb on + strand, within GFF481 at 146.111 kb on - strand, within GFF481 at 146.173 kb on + strand, within GFF481 at 146.372 kb on - strand, within GFF481 at 146.390 kb on - strand, within GFF481
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 143,235 + GFF479 0.35 -0.6 143,235 + GFF479 0.35 -0.9 143,329 - GFF479 0.46 -0.5 144,545 - GFF480 0.44 +0.2 144,911 - GFF480 0.68 +0.7 144,931 + GFF480 0.69 +0.6 144,932 - GFF480 0.69 +0.0 144,932 - GFF480 0.69 +0.6 144,932 - GFF480 0.69 +0.5 145,061 - GFF480 0.77 -0.4 145,412 - -0.9 145,507 + +0.2 145,508 - +0.3 145,652 - GFF481 0.16 -0.4 145,652 - GFF481 0.16 +0.4 145,657 + GFF481 0.17 -0.8 145,657 + GFF481 0.17 -0.6 146,111 - GFF481 0.56 +1.4 146,173 + GFF481 0.61 -0.0 146,372 - GFF481 0.78 -0.9 146,390 - GFF481 0.79 -0.2
Or see this region's nucleotide sequence