Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4666

Experiment: Ying_Others16 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4664 and GFF4665 are separated by 78 nucleotidesGFF4665 and GFF4666 overlap by 4 nucleotidesGFF4666 and GFF4667 are separated by 121 nucleotidesGFF4667 and GFF4668 are separated by 16 nucleotides GFF4664 - Type IV pilus biogenesis protein PilZ, at 1,615,186 to 1,615,512 GFF4664 GFF4665 - Putative deoxyribonuclease YcfH, at 1,615,591 to 1,616,403 GFF4665 GFF4666 - FOG: Ankyrin repeat, at 1,616,400 to 1,617,101 GFF4666 GFF4667 - Tricarboxylate transport protein TctB, at 1,617,223 to 1,617,711 GFF4667 GFF4668 - Tricarboxylate transport membrane protein TctA, at 1,617,728 to 1,619,239 GFF4668 Position (kb) 1616 1617 1618Strain fitness (log2 ratio) -2 -1 0 1 2at 1615.729 kb on + strand, within GFF4665at 1615.729 kb on + strand, within GFF4665at 1615.730 kb on - strand, within GFF4665at 1615.730 kb on - strand, within GFF4665at 1615.876 kb on + strand, within GFF4665at 1615.876 kb on + strand, within GFF4665at 1615.877 kb on - strand, within GFF4665at 1615.877 kb on - strand, within GFF4665at 1615.879 kb on + strand, within GFF4665at 1615.880 kb on - strand, within GFF4665at 1616.200 kb on + strand, within GFF4665at 1616.200 kb on + strand, within GFF4665at 1616.200 kb on + strand, within GFF4665at 1616.200 kb on + strand, within GFF4665at 1616.200 kb on + strand, within GFF4665at 1616.200 kb on + strand, within GFF4665at 1616.200 kb on + strand, within GFF4665at 1616.200 kb on + strand, within GFF4665at 1616.200 kb on + strand, within GFF4665at 1616.201 kb on - strand, within GFF4665at 1616.201 kb on - strand, within GFF4665at 1616.201 kb on - strand, within GFF4665at 1616.201 kb on - strand, within GFF4665at 1616.201 kb on - strand, within GFF4665at 1616.201 kb on - strand, within GFF4665at 1616.201 kb on - strand, within GFF4665at 1616.201 kb on - strand, within GFF4665at 1616.201 kb on - strand, within GFF4665at 1616.201 kb on - strand, within GFF4665at 1616.201 kb on - strand, within GFF4665at 1616.201 kb on - strand, within GFF4665at 1616.201 kb on - strand, within GFF4665at 1616.243 kb on - strand, within GFF4665at 1616.243 kb on - strand, within GFF4665at 1616.287 kb on + strand, within GFF4665at 1616.287 kb on + strand, within GFF4665at 1616.287 kb on + strand, within GFF4665at 1616.287 kb on + strand, within GFF4665at 1616.287 kb on + strand, within GFF4665at 1616.288 kb on - strand, within GFF4665at 1616.288 kb on - strand, within GFF4665at 1616.288 kb on - strand, within GFF4665at 1616.288 kb on - strand, within GFF4665at 1616.288 kb on - strand, within GFF4665at 1616.427 kb on - strandat 1616.616 kb on + strand, within GFF4666at 1616.617 kb on - strand, within GFF4666at 1616.617 kb on - strand, within GFF4666at 1616.811 kb on + strand, within GFF4666at 1616.811 kb on + strand, within GFF4666at 1616.812 kb on - strand, within GFF4666at 1616.812 kb on - strand, within GFF4666at 1616.812 kb on - strand, within GFF4666at 1616.812 kb on - strand, within GFF4666at 1616.812 kb on - strand, within GFF4666at 1616.812 kb on - strand, within GFF4666at 1616.812 kb on - strand, within GFF4666at 1616.877 kb on + strand, within GFF4666at 1616.877 kb on + strand, within GFF4666at 1616.877 kb on + strand, within GFF4666at 1616.877 kb on + strand, within GFF4666at 1616.877 kb on + strand, within GFF4666at 1616.877 kb on + strand, within GFF4666at 1616.877 kb on + strand, within GFF4666at 1616.877 kb on + strand, within GFF4666at 1616.877 kb on + strand, within GFF4666at 1616.878 kb on - strand, within GFF4666at 1616.878 kb on - strand, within GFF4666at 1616.878 kb on - strand, within GFF4666at 1616.878 kb on - strand, within GFF4666at 1616.878 kb on - strand, within GFF4666at 1616.878 kb on - strand, within GFF4666at 1617.054 kb on - strandat 1617.092 kb on + strandat 1617.092 kb on + strandat 1617.092 kb on + strandat 1617.092 kb on + strandat 1617.092 kb on + strandat 1617.092 kb on + strandat 1617.093 kb on - strandat 1617.093 kb on - strandat 1617.093 kb on - strandat 1617.093 kb on - strandat 1617.093 kb on - strandat 1617.093 kb on - strandat 1617.093 kb on - strandat 1617.147 kb on + strandat 1617.147 kb on + strandat 1617.147 kb on + strandat 1617.147 kb on + strandat 1617.147 kb on + strandat 1617.147 kb on + strandat 1617.147 kb on + strandat 1617.148 kb on - strandat 1617.148 kb on - strandat 1617.148 kb on - strandat 1617.148 kb on - strandat 1617.148 kb on - strandat 1617.148 kb on - strandat 1617.148 kb on - strandat 1617.148 kb on - strandat 1617.153 kb on + strandat 1617.153 kb on + strandat 1617.153 kb on + strandat 1617.153 kb on + strandat 1617.154 kb on - strandat 1617.154 kb on - strandat 1617.154 kb on - strandat 1617.154 kb on - strandat 1617.154 kb on - strandat 1617.154 kb on - strandat 1617.154 kb on - strandat 1617.314 kb on + strand, within GFF4667at 1617.314 kb on + strand, within GFF4667at 1617.343 kb on + strand, within GFF4667at 1617.343 kb on + strand, within GFF4667at 1617.344 kb on - strand, within GFF4667at 1617.556 kb on + strand, within GFF4667at 1617.556 kb on + strand, within GFF4667at 1617.557 kb on - strand, within GFF4667at 1617.557 kb on - strand, within GFF4667at 1617.557 kb on - strand, within GFF4667at 1617.580 kb on + strand, within GFF4667at 1617.580 kb on + strand, within GFF4667at 1617.646 kb on + strand, within GFF4667at 1617.646 kb on + strand, within GFF4667at 1617.646 kb on + strand, within GFF4667at 1617.646 kb on + strand, within GFF4667at 1617.647 kb on - strand, within GFF4667at 1617.647 kb on - strand, within GFF4667at 1617.647 kb on - strand, within GFF4667at 1617.647 kb on - strand, within GFF4667at 1617.647 kb on - strand, within GFF4667at 1617.647 kb on - strand, within GFF4667at 1617.661 kb on + strand, within GFF4667at 1617.661 kb on + strand, within GFF4667at 1617.662 kb on - strand, within GFF4667at 1617.662 kb on - strand, within GFF4667at 1617.662 kb on - strand, within GFF4667at 1617.662 kb on - strand, within GFF4667at 1617.662 kb on - strand, within GFF4667at 1617.791 kb on + strandat 1617.791 kb on + strandat 1617.791 kb on + strandat 1617.791 kb on + strandat 1617.791 kb on + strandat 1617.792 kb on - strandat 1617.884 kb on + strand, within GFF4668at 1617.884 kb on + strand, within GFF4668at 1617.888 kb on - strand, within GFF4668at 1617.929 kb on + strand, within GFF4668at 1617.929 kb on + strand, within GFF4668at 1617.929 kb on + strand, within GFF4668at 1617.929 kb on + strand, within GFF4668at 1617.929 kb on + strand, within GFF4668at 1617.929 kb on + strand, within GFF4668at 1617.929 kb on + strand, within GFF4668at 1617.929 kb on + strand, within GFF4668at 1617.929 kb on + strand, within GFF4668at 1617.929 kb on + strand, within GFF4668at 1617.929 kb on + strand, within GFF4668at 1617.929 kb on + strand, within GFF4668at 1617.929 kb on + strand, within GFF4668at 1617.929 kb on + strand, within GFF4668at 1617.929 kb on + strand, within GFF4668at 1617.929 kb on + strand, within GFF4668at 1617.929 kb on + strand, within GFF4668at 1617.929 kb on + strand, within GFF4668at 1617.930 kb on - strand, within GFF4668at 1617.930 kb on - strand, within GFF4668at 1617.930 kb on - strand, within GFF4668at 1617.930 kb on - strand, within GFF4668at 1617.930 kb on - strand, within GFF4668at 1617.930 kb on - strand, within GFF4668at 1617.930 kb on - strand, within GFF4668at 1617.930 kb on - strand, within GFF4668at 1617.930 kb on - strand, within GFF4668at 1617.930 kb on - strand, within GFF4668at 1617.930 kb on - strand, within GFF4668at 1617.930 kb on - strand, within GFF4668at 1617.930 kb on - strand, within GFF4668at 1617.930 kb on - strand, within GFF4668at 1617.930 kb on - strand, within GFF4668at 1617.930 kb on - strand, within GFF4668at 1617.930 kb on - strand, within GFF4668at 1617.932 kb on + strand, within GFF4668at 1617.932 kb on + strand, within GFF4668at 1617.932 kb on + strand, within GFF4668at 1617.932 kb on + strand, within GFF4668at 1617.933 kb on - strand, within GFF4668at 1617.933 kb on - strand, within GFF4668at 1617.933 kb on - strand, within GFF4668at 1617.933 kb on - strand, within GFF4668at 1617.944 kb on + strand, within GFF4668at 1617.944 kb on + strand, within GFF4668at 1618.100 kb on - strand, within GFF4668at 1618.100 kb on - strand, within GFF4668

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2
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1,615,729 + GFF4665 0.17 -0.4
1,615,729 + GFF4665 0.17 +0.7
1,615,730 - GFF4665 0.17 +0.8
1,615,730 - GFF4665 0.17 -1.1
1,615,876 + GFF4665 0.35 -0.4
1,615,876 + GFF4665 0.35 -0.2
1,615,877 - GFF4665 0.35 -1.2
1,615,877 - GFF4665 0.35 +0.1
1,615,879 + GFF4665 0.35 -0.2
1,615,880 - GFF4665 0.36 -1.9
1,616,200 + GFF4665 0.75 +0.2
1,616,200 + GFF4665 0.75 -0.7
1,616,200 + GFF4665 0.75 -0.6
1,616,200 + GFF4665 0.75 +0.2
1,616,200 + GFF4665 0.75 -0.6
1,616,200 + GFF4665 0.75 +0.5
1,616,200 + GFF4665 0.75 +0.7
1,616,200 + GFF4665 0.75 -0.9
1,616,200 + GFF4665 0.75 +0.0
1,616,201 - GFF4665 0.75 -0.0
1,616,201 - GFF4665 0.75 -0.7
1,616,201 - GFF4665 0.75 -0.3
1,616,201 - GFF4665 0.75 +0.6
1,616,201 - GFF4665 0.75 +0.2
1,616,201 - GFF4665 0.75 -0.0
1,616,201 - GFF4665 0.75 -0.6
1,616,201 - GFF4665 0.75 -0.3
1,616,201 - GFF4665 0.75 -0.3
1,616,201 - GFF4665 0.75 -0.9
1,616,201 - GFF4665 0.75 -0.5
1,616,201 - GFF4665 0.75 -0.3
1,616,201 - GFF4665 0.75 -2.0
1,616,243 - GFF4665 0.80 -0.1
1,616,243 - GFF4665 0.80 -1.3
1,616,287 + GFF4665 0.86 +0.6
1,616,287 + GFF4665 0.86 -0.5
1,616,287 + GFF4665 0.86 -1.4
1,616,287 + GFF4665 0.86 -0.2
1,616,287 + GFF4665 0.86 +0.3
1,616,288 - GFF4665 0.86 +0.6
1,616,288 - GFF4665 0.86 -0.6
1,616,288 - GFF4665 0.86 +2.5
1,616,288 - GFF4665 0.86 -1.1
1,616,288 - GFF4665 0.86 -0.7
1,616,427 - +0.0
1,616,616 + GFF4666 0.31 +0.3
1,616,617 - GFF4666 0.31 -0.1
1,616,617 - GFF4666 0.31 +0.8
1,616,811 + GFF4666 0.59 +0.7
1,616,811 + GFF4666 0.59 +0.5
1,616,812 - GFF4666 0.59 +0.5
1,616,812 - GFF4666 0.59 +1.3
1,616,812 - GFF4666 0.59 +0.1
1,616,812 - GFF4666 0.59 -0.5
1,616,812 - GFF4666 0.59 -0.3
1,616,812 - GFF4666 0.59 -0.2
1,616,812 - GFF4666 0.59 -0.1
1,616,877 + GFF4666 0.68 +0.7
1,616,877 + GFF4666 0.68 -0.2
1,616,877 + GFF4666 0.68 +0.3
1,616,877 + GFF4666 0.68 +0.9
1,616,877 + GFF4666 0.68 -1.1
1,616,877 + GFF4666 0.68 -0.5
1,616,877 + GFF4666 0.68 -0.1
1,616,877 + GFF4666 0.68 +0.1
1,616,877 + GFF4666 0.68 -0.5
1,616,878 - GFF4666 0.68 -1.5
1,616,878 - GFF4666 0.68 +0.4
1,616,878 - GFF4666 0.68 -0.4
1,616,878 - GFF4666 0.68 +0.2
1,616,878 - GFF4666 0.68 +0.2
1,616,878 - GFF4666 0.68 +1.1
1,617,054 - -0.7
1,617,092 + -0.5
1,617,092 + +0.5
1,617,092 + -0.5
1,617,092 + +0.0
1,617,092 + +0.0
1,617,092 + +0.1
1,617,093 - -0.1
1,617,093 - +0.1
1,617,093 - +0.1
1,617,093 - +0.5
1,617,093 - +0.1
1,617,093 - +0.5
1,617,093 - -0.1
1,617,147 + +0.1
1,617,147 + +0.0
1,617,147 + -0.1
1,617,147 + +0.8
1,617,147 + +0.5
1,617,147 + +0.0
1,617,147 + +0.3
1,617,148 - +0.7
1,617,148 - +0.3
1,617,148 - +0.4
1,617,148 - +0.2
1,617,148 - +0.2
1,617,148 - +0.8
1,617,148 - +0.1
1,617,148 - +0.9
1,617,153 + +0.5
1,617,153 + +0.7
1,617,153 + +0.5
1,617,153 + -0.3
1,617,154 - +0.1
1,617,154 - -0.8
1,617,154 - +0.5
1,617,154 - +0.5
1,617,154 - +1.1
1,617,154 - -0.3
1,617,154 - +0.7
1,617,314 + GFF4667 0.19 +0.4
1,617,314 + GFF4667 0.19 -0.0
1,617,343 + GFF4667 0.25 -0.2
1,617,343 + GFF4667 0.25 +0.4
1,617,344 - GFF4667 0.25 -0.4
1,617,556 + GFF4667 0.68 -1.0
1,617,556 + GFF4667 0.68 -0.5
1,617,557 - GFF4667 0.68 -0.2
1,617,557 - GFF4667 0.68 -0.2
1,617,557 - GFF4667 0.68 -0.3
1,617,580 + GFF4667 0.73 +1.0
1,617,580 + GFF4667 0.73 +0.2
1,617,646 + GFF4667 0.87 -0.5
1,617,646 + GFF4667 0.87 +0.0
1,617,646 + GFF4667 0.87 -0.3
1,617,646 + GFF4667 0.87 +0.1
1,617,647 - GFF4667 0.87 -0.3
1,617,647 - GFF4667 0.87 +0.2
1,617,647 - GFF4667 0.87 +0.4
1,617,647 - GFF4667 0.87 -0.0
1,617,647 - GFF4667 0.87 +1.1
1,617,647 - GFF4667 0.87 +0.0
1,617,661 + GFF4667 0.90 -0.3
1,617,661 + GFF4667 0.90 -0.2
1,617,662 - GFF4667 0.90 +0.8
1,617,662 - GFF4667 0.90 -0.0
1,617,662 - GFF4667 0.90 +0.5
1,617,662 - GFF4667 0.90 +0.2
1,617,662 - GFF4667 0.90 +0.5
1,617,791 + +0.0
1,617,791 + +0.1
1,617,791 + -0.7
1,617,791 + -0.3
1,617,791 + +0.4
1,617,792 - +0.3
1,617,884 + GFF4668 0.10 +0.1
1,617,884 + GFF4668 0.10 -0.4
1,617,888 - GFF4668 0.11 -1.2
1,617,929 + GFF4668 0.13 -0.2
1,617,929 + GFF4668 0.13 +0.5
1,617,929 + GFF4668 0.13 +0.2
1,617,929 + GFF4668 0.13 -0.2
1,617,929 + GFF4668 0.13 -0.1
1,617,929 + GFF4668 0.13 -0.1
1,617,929 + GFF4668 0.13 -0.1
1,617,929 + GFF4668 0.13 -1.3
1,617,929 + GFF4668 0.13 -0.0
1,617,929 + GFF4668 0.13 -0.7
1,617,929 + GFF4668 0.13 -0.1
1,617,929 + GFF4668 0.13 +0.1
1,617,929 + GFF4668 0.13 -0.4
1,617,929 + GFF4668 0.13 -0.4
1,617,929 + GFF4668 0.13 -0.3
1,617,929 + GFF4668 0.13 -0.2
1,617,929 + GFF4668 0.13 -0.0
1,617,929 + GFF4668 0.13 +0.9
1,617,930 - GFF4668 0.13 -0.4
1,617,930 - GFF4668 0.13 -0.0
1,617,930 - GFF4668 0.13 -0.8
1,617,930 - GFF4668 0.13 -0.2
1,617,930 - GFF4668 0.13 +1.1
1,617,930 - GFF4668 0.13 -0.7
1,617,930 - GFF4668 0.13 +0.6
1,617,930 - GFF4668 0.13 +0.3
1,617,930 - GFF4668 0.13 -0.1
1,617,930 - GFF4668 0.13 -0.6
1,617,930 - GFF4668 0.13 +0.3
1,617,930 - GFF4668 0.13 -0.3
1,617,930 - GFF4668 0.13 +0.4
1,617,930 - GFF4668 0.13 -0.4
1,617,930 - GFF4668 0.13 -0.1
1,617,930 - GFF4668 0.13 -0.3
1,617,930 - GFF4668 0.13 -0.2
1,617,932 + GFF4668 0.13 -0.8
1,617,932 + GFF4668 0.13 -0.3
1,617,932 + GFF4668 0.13 -1.0
1,617,932 + GFF4668 0.13 -0.6
1,617,933 - GFF4668 0.14 +0.7
1,617,933 - GFF4668 0.14 +0.0
1,617,933 - GFF4668 0.14 -0.7
1,617,933 - GFF4668 0.14 -0.2
1,617,944 + GFF4668 0.14 +0.5
1,617,944 + GFF4668 0.14 +0.0
1,618,100 - GFF4668 0.25 -0.0
1,618,100 - GFF4668 0.25 +0.7

Or see this region's nucleotide sequence