Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4644

Experiment: Ying_Others16 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 2
1,592,317	+				+0.2
1,592,318	-				+1.1
1,592,318	-				+0.2
1,592,424	-		GFF4643	0.17	-0.1
1,592,494	+		GFF4643	0.25	+0.5
1,592,525	+		GFF4643	0.28	-1.7
1,592,526	-		GFF4643	0.28	-0.7
1,592,526	-		GFF4643	0.28	-0.5
1,592,576	-		GFF4643	0.33	-0.6
1,592,576	-		GFF4643	0.33	-0.3
1,592,618	+		GFF4643	0.38	+0.2
1,592,618	+		GFF4643	0.38	-0.9
1,592,618	+		GFF4643	0.38	+0.3
1,592,618	+		GFF4643	0.38	-0.2
1,592,619	-		GFF4643	0.38	+0.4
1,592,619	-		GFF4643	0.38	-0.5
1,592,619	-		GFF4643	0.38	-0.3
1,592,622	-		GFF4643	0.38	+0.1
1,592,918	+		GFF4643	0.69	+0.6
1,593,440	+		GFF4644	0.30	+1.3
1,593,441	-		GFF4644	0.30	+0.8
1,593,441	-		GFF4644	0.30	+0.3
1,593,512	-		GFF4644	0.40	-0.5
1,593,754	+		GFF4644	0.71	+0.0
1,593,791	+		GFF4644	0.76	+1.2
1,594,069	+				+1.5
1,594,145	+				+0.1
1,594,173	-				+0.3
1,594,240	-				-2.4
1,594,373	+				-0.2
1,594,373	+				-1.0
1,594,450	+		GFF4645	0.12	+0.4
1,594,450	+		GFF4645	0.12	-0.1
1,594,450	+		GFF4645	0.12	-0.0
1,594,451	-		GFF4645	0.12	-0.2
1,594,451	-		GFF4645	0.12	+0.1
1,594,494	+		GFF4645	0.16	-0.3
1,594,494	+		GFF4645	0.16	-0.2
1,594,494	+		GFF4645	0.16	+0.4
1,594,494	+		GFF4645	0.16	+0.1
1,594,494	+		GFF4645	0.16	-0.2
1,594,495	-		GFF4645	0.16	+0.5
1,594,495	-		GFF4645	0.16	-0.3
1,594,495	-		GFF4645	0.16	-0.2
1,594,495	-		GFF4645	0.16	+0.0
1,594,621	+		GFF4645	0.27	+1.2
1,594,621	+		GFF4645	0.27	-1.8
1,594,621	+		GFF4645	0.27	-0.3
1,594,622	-		GFF4645	0.27	-2.2
1,594,690	+		GFF4645	0.32	-0.2
1,594,859	+		GFF4645	0.46	-0.3
1,594,859	+		GFF4645	0.46	-0.2
1,594,859	+		GFF4645	0.46	-0.5
1,594,860	-		GFF4645	0.46	+0.1
1,594,860	-		GFF4645	0.46	-0.3
1,594,860	-		GFF4645	0.46	-0.2
1,594,860	-		GFF4645	0.46	-0.2
1,594,860	-		GFF4645	0.46	-0.1
1,594,941	+		GFF4645	0.53	+0.8