Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF462

Experiment: Ying_Others16 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF461 and GFF462 are separated by 98 nucleotidesGFF462 and GFF463 overlap by 4 nucleotidesGFF463 and GFF464 are separated by 98 nucleotides GFF461 - Transcriptional regulator, LysR family, at 126,066 to 126,998 GFF461 GFF462 - FIG074102: hypothetical protein, at 127,097 to 127,900 GFF462 GFF463 - Transcriptional regulator, GntR family, at 127,897 to 128,553 GFF463 GFF464 - Isochorismatase (EC 3.3.2.1), at 128,652 to 129,320 GFF464 Position (kb) 127 128Strain fitness (log2 ratio) -1 0 1at 126.188 kb on - strand, within GFF461at 126.196 kb on + strand, within GFF461at 126.196 kb on + strand, within GFF461at 126.197 kb on - strand, within GFF461at 126.424 kb on + strand, within GFF461at 126.425 kb on - strand, within GFF461at 127.041 kb on + strandat 127.042 kb on - strandat 127.317 kb on + strand, within GFF462at 127.328 kb on + strand, within GFF462at 127.329 kb on - strand, within GFF462at 127.452 kb on - strand, within GFF462at 127.452 kb on - strand, within GFF462at 127.452 kb on - strand, within GFF462at 127.605 kb on - strand, within GFF462at 128.343 kb on - strand, within GFF463at 128.550 kb on - strandat 128.761 kb on + strand, within GFF464at 128.761 kb on + strand, within GFF464at 128.761 kb on + strand, within GFF464at 128.762 kb on - strand, within GFF464

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2
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126,188 - GFF461 0.13 +0.7
126,196 + GFF461 0.14 +0.1
126,196 + GFF461 0.14 +0.9
126,197 - GFF461 0.14 +1.3
126,424 + GFF461 0.38 -1.5
126,425 - GFF461 0.38 +0.9
127,041 + -0.6
127,042 - +0.1
127,317 + GFF462 0.27 +0.5
127,328 + GFF462 0.29 -1.5
127,329 - GFF462 0.29 +0.7
127,452 - GFF462 0.44 +0.4
127,452 - GFF462 0.44 +0.3
127,452 - GFF462 0.44 +0.2
127,605 - GFF462 0.63 +0.8
128,343 - GFF463 0.68 +0.4
128,550 - -1.2
128,761 + GFF464 0.16 +0.1
128,761 + GFF464 0.16 +0.3
128,761 + GFF464 0.16 +0.2
128,762 - GFF464 0.16 +0.3

Or see this region's nucleotide sequence