Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF459 and GFF460 are separated by 105 nucleotides GFF460 and GFF461 overlap by 4 nucleotides GFF461 and GFF462 are separated by 98 nucleotides GFF462 and GFF463 overlap by 4 nucleotides
GFF459 - Tricarboxylate transport protein TctC, at 124,507 to 125,487
GFF459
GFF460 - Transcriptional regulator, MarR family, at 125,593 to 126,069
GFF460
GFF461 - Transcriptional regulator, LysR family, at 126,066 to 126,998
GFF461
GFF462 - FIG074102: hypothetical protein, at 127,097 to 127,900
GFF462
GFF463 - Transcriptional regulator, GntR family, at 127,897 to 128,553
GFF463
Position (kb) 126
127 Strain fitness (log2 ratio) -1
0
1 at 125.342 kb on + strand, within GFF459 at 125.342 kb on + strand, within GFF459 at 125.343 kb on - strand, within GFF459 at 125.528 kb on + strand at 125.528 kb on + strand at 125.555 kb on - strand at 125.560 kb on + strand at 125.561 kb on - strand at 125.561 kb on - strand at 125.561 kb on - strand at 125.561 kb on - strand at 125.894 kb on - strand, within GFF460 at 126.038 kb on - strand at 126.188 kb on - strand, within GFF461 at 126.196 kb on + strand, within GFF461 at 126.196 kb on + strand, within GFF461 at 126.197 kb on - strand, within GFF461 at 126.424 kb on + strand, within GFF461 at 126.425 kb on - strand, within GFF461 at 127.041 kb on + strand at 127.042 kb on - strand at 127.317 kb on + strand, within GFF462 at 127.328 kb on + strand, within GFF462 at 127.329 kb on - strand, within GFF462 at 127.452 kb on - strand, within GFF462 at 127.452 kb on - strand, within GFF462 at 127.452 kb on - strand, within GFF462 at 127.605 kb on - strand, within GFF462
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 125,342 + GFF459 0.85 -0.8 125,342 + GFF459 0.85 +0.5 125,343 - GFF459 0.85 +0.5 125,528 + -1.3 125,528 + -0.8 125,555 - -1.0 125,560 + -0.9 125,561 - +0.3 125,561 - -0.0 125,561 - +0.3 125,561 - +0.2 125,894 - GFF460 0.63 +0.7 126,038 - -0.3 126,188 - GFF461 0.13 +0.7 126,196 + GFF461 0.14 +0.1 126,196 + GFF461 0.14 +0.9 126,197 - GFF461 0.14 +1.3 126,424 + GFF461 0.38 -1.5 126,425 - GFF461 0.38 +0.9 127,041 + -0.6 127,042 - +0.1 127,317 + GFF462 0.27 +0.5 127,328 + GFF462 0.29 -1.5 127,329 - GFF462 0.29 +0.7 127,452 - GFF462 0.44 +0.4 127,452 - GFF462 0.44 +0.3 127,452 - GFF462 0.44 +0.2 127,605 - GFF462 0.63 +0.8
Or see this region's nucleotide sequence