Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF455 and GFF456 overlap by 8 nucleotides GFF456 and GFF457 are separated by 8 nucleotides GFF457 and GFF458 overlap by 4 nucleotides GFF458 and GFF459 are separated by 7 nucleotides
GFF455 - putative monooxygenase, at 122,017 to 123,243
GFF455
GFF456 - hypothetical protein, at 123,236 to 123,715
GFF456
GFF457 - bll2395; hypothetical protein, at 123,724 to 124,113
GFF457
GFF458 - DGPFAETKE family protein, at 124,110 to 124,499
GFF458
GFF459 - Tricarboxylate transport protein TctC, at 124,507 to 125,487
GFF459
Position (kb) 124
125 Strain fitness (log2 ratio) -1
0
1 at 123.641 kb on + strand, within GFF456 at 123.641 kb on + strand, within GFF456 at 123.642 kb on - strand, within GFF456 at 123.803 kb on - strand, within GFF457 at 124.109 kb on + strand at 124.109 kb on + strand at 124.212 kb on + strand, within GFF458 at 124.212 kb on + strand, within GFF458 at 124.640 kb on + strand, within GFF459 at 124.641 kb on - strand, within GFF459 at 124.932 kb on - strand, within GFF459 at 125.018 kb on + strand, within GFF459 at 125.019 kb on - strand, within GFF459 at 125.342 kb on + strand, within GFF459 at 125.342 kb on + strand, within GFF459 at 125.343 kb on - strand, within GFF459
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 123,641 + GFF456 0.84 +0.1 123,641 + GFF456 0.84 +0.3 123,642 - GFF456 0.85 +0.1 123,803 - GFF457 0.20 +0.3 124,109 + -0.2 124,109 + +1.2 124,212 + GFF458 0.26 +0.4 124,212 + GFF458 0.26 +0.4 124,640 + GFF459 0.14 -0.2 124,641 - GFF459 0.14 -0.1 124,932 - GFF459 0.43 -0.3 125,018 + GFF459 0.52 -0.1 125,019 - GFF459 0.52 -0.6 125,342 + GFF459 0.85 -0.8 125,342 + GFF459 0.85 +0.5 125,343 - GFF459 0.85 +0.5
Or see this region's nucleotide sequence