Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4456

Experiment: Ying_Others16 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4455 and GFF4456 are separated by 143 nucleotidesGFF4456 and GFF4457 are separated by 1 nucleotidesGFF4457 and GFF4458 are separated by 2 nucleotides GFF4455 - putative exported protein, at 1,383,652 to 1,384,512 GFF4455 GFF4456 - Two-component system sensory histidine kinase, at 1,384,656 to 1,386,032 GFF4456 GFF4457 - Signal transduction response regulator, at 1,386,034 to 1,386,393 GFF4457 GFF4458 - Histidine kinase, at 1,386,396 to 1,387,739 GFF4458 Position (kb) 1384 1385 1386 1387Strain fitness (log2 ratio) -1 0 1at 1383.910 kb on + strand, within GFF4455at 1383.910 kb on + strand, within GFF4455at 1383.911 kb on - strand, within GFF4455at 1383.991 kb on + strand, within GFF4455at 1383.992 kb on - strand, within GFF4455at 1384.034 kb on - strand, within GFF4455at 1385.374 kb on - strand, within GFF4456at 1385.877 kb on + strand, within GFF4456at 1386.877 kb on - strand, within GFF4458

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2
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1,383,910 + GFF4455 0.30 +0.3
1,383,910 + GFF4455 0.30 +0.7
1,383,911 - GFF4455 0.30 +0.1
1,383,991 + GFF4455 0.39 -1.3
1,383,992 - GFF4455 0.39 +0.6
1,384,034 - GFF4455 0.44 -0.2
1,385,374 - GFF4456 0.52 +0.7
1,385,877 + GFF4456 0.89 -1.0
1,386,877 - GFF4458 0.36 +0.0

Or see this region's nucleotide sequence