Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4257

Experiment: Ying_Others16 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 2
1,180,421	-		GFF4256	0.48	-0.2
1,180,421	-		GFF4256	0.48	-0.1
1,180,421	-		GFF4256	0.48	-0.2
1,180,421	-		GFF4256	0.48	+1.0
1,180,421	-		GFF4256	0.48	+0.2
1,180,471	+		GFF4256	0.51	-1.4
1,180,471	+		GFF4256	0.51	+1.2
1,180,471	+		GFF4256	0.51	-0.4
1,180,471	+		GFF4256	0.51	-0.8
1,180,471	+		GFF4256	0.51	-0.2
1,180,471	+		GFF4256	0.51	+1.3
1,180,472	-		GFF4256	0.51	+0.1
1,180,472	-		GFF4256	0.51	+0.1
1,180,472	-		GFF4256	0.51	-0.1
1,180,472	-		GFF4256	0.51	+1.4
1,180,472	-		GFF4256	0.51	+0.2
1,180,472	-		GFF4256	0.51	-0.6
1,180,472	-		GFF4256	0.51	-0.2
1,180,472	-		GFF4256	0.51	-0.1
1,180,507	+		GFF4256	0.53	-0.1
1,180,507	+		GFF4256	0.53	-0.3
1,180,576	+		GFF4256	0.58	-0.6
1,180,577	-		GFF4256	0.58	+1.2
1,180,577	-		GFF4256	0.58	+0.2
1,180,615	+		GFF4256	0.60	+0.1
1,180,631	-		GFF4256	0.61	+0.2
1,180,856	-		GFF4256	0.75	-0.2
1,180,888	+		GFF4256	0.77	-0.0
1,180,889	-		GFF4256	0.77	-1.8
1,180,906	+		GFF4256	0.78	-0.1
1,180,907	-		GFF4256	0.78	+0.1
1,180,907	-		GFF4256	0.78	+0.0
1,181,071	+		GFF4256	0.88	+0.9
1,181,472	+		GFF4257	0.26	-0.1
1,181,472	+		GFF4257	0.26	+0.5
1,181,472	+		GFF4257	0.26	-0.0
1,181,473	-		GFF4257	0.26	-0.1
1,181,473	-		GFF4257	0.26	+0.4
1,181,535	+		GFF4257	0.34	-1.1
1,181,536	-		GFF4257	0.34	-0.5
1,181,697	+		GFF4257	0.55	+1.1
1,181,697	+		GFF4257	0.55	-0.4
1,181,697	+		GFF4257	0.55	-0.7
1,181,697	+		GFF4257	0.55	-1.3
1,181,697	+		GFF4257	0.55	-2.3
1,181,698	-		GFF4257	0.55	-0.5
1,181,700	+		GFF4257	0.56	+0.7
1,181,700	+		GFF4257	0.56	-0.3
1,181,700	+		GFF4257	0.56	-0.8
1,181,700	+		GFF4257	0.56	-0.6
1,181,700	+		GFF4257	0.56	-1.3
1,181,701	-		GFF4257	0.56	-1.5
1,181,701	-		GFF4257	0.56	-0.5
1,181,814	+		GFF4257	0.70	-0.0
1,181,814	+		GFF4257	0.70	-0.5
1,181,814	+		GFF4257	0.70	-1.6
1,182,006	+				-0.3
1,182,006	+				-1.5
1,182,006	+				-0.3
1,182,006	+				-0.5
1,182,006	+				-0.2
1,182,006	+				-2.1
1,182,006	+				-0.3
1,182,006	+				-1.3
1,182,006	+				+0.8
1,182,006	+				-0.3
1,182,006	+				-0.1
1,182,007	-				-0.5
1,182,007	-				-0.3
1,182,007	-				-1.0
1,182,007	-				+0.6
1,182,007	-				+0.2
1,182,007	-				-0.5
1,182,007	-				-0.5
1,182,007	-				-1.0
1,182,007	-				+1.0
1,182,007	-				-1.1
1,182,007	-				-0.6
1,182,007	-				-0.4
1,182,007	-				-1.2
1,182,007	-				-1.3
1,182,060	-				-0.0
1,182,069	+				+0.6
1,182,069	+				+0.1
1,182,069	+				+0.7
1,182,070	-				-1.1
1,182,070	-				-0.1
1,182,070	-				-0.1
1,182,070	-				-0.3
1,182,070	-				-0.2
1,182,070	-				+0.3
1,182,164	+				-0.3
1,182,164	+				-0.2
1,182,165	-				+1.5
1,182,202	+				+1.2
1,182,202	+				-0.4
1,182,202	+				+0.9
1,182,202	+				+0.8
1,182,203	-				+0.4
1,182,203	-				-1.3
1,182,203	-				-0.4
1,182,203	-				+0.3
1,182,203	-				-0.1
1,182,203	-				+0.2
1,182,203	-				+0.9
1,182,259	+		GFF4258	0.12	+0.1
1,182,259	+		GFF4258	0.12	+0.0
1,182,628	+		GFF4258	0.60	+0.3
1,182,628	+		GFF4258	0.60	+0.4
1,182,628	+		GFF4258	0.60	-0.5
1,182,629	-		GFF4258	0.61	+0.4
1,182,629	-		GFF4258	0.61	+0.0
1,182,629	-		GFF4258	0.61	-0.4
1,182,629	-		GFF4258	0.61	+0.1
1,182,701	+		GFF4258	0.70	-0.7
1,182,701	+		GFF4258	0.70	+0.4
1,182,702	-		GFF4258	0.70	-1.0
1,182,724	+		GFF4258	0.73	-0.1
1,182,763	+		GFF4258	0.78	+0.1
1,182,764	-		GFF4258	0.78	+0.0
1,182,817	+		GFF4258	0.85	-0.2
1,182,818	-		GFF4258	0.86	-0.8
1,182,818	-		GFF4258	0.86	-0.1
1,182,818	-		GFF4258	0.86	+0.1
1,182,957	+				-0.9
1,182,957	+				-0.3
1,182,992	-				-2.0