Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4159

Experiment: Ying_Others16 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 2
1,074,718	-				+0.2
1,074,718	-				-0.7
1,074,718	-				-0.1
1,074,718	-				+0.1
1,074,907	+		GFF4157	0.62	+0.9
1,074,907	+		GFF4157	0.62	-0.1
1,074,908	-		GFF4157	0.62	+0.5
1,074,952	+		GFF4157	0.76	+0.8
1,074,952	+		GFF4157	0.76	-1.0
1,074,952	+		GFF4157	0.76	-0.9
1,074,953	-		GFF4157	0.77	+1.1
1,075,098	+				+1.5
1,075,293	+		GFF4158	0.83	+0.4
1,075,293	+		GFF4158	0.83	-0.9
1,075,293	+		GFF4158	0.83	-0.2
1,075,293	+		GFF4158	0.83	-0.7
1,075,294	-		GFF4158	0.83	+1.0
1,075,294	-		GFF4158	0.83	-0.2
1,075,294	-		GFF4158	0.83	+1.0
1,075,294	-		GFF4158	0.83	+0.1
1,075,297	+		GFF4158	0.84	+0.3
1,075,298	-		GFF4158	0.85	-0.0
1,075,298	-		GFF4158	0.85	-0.3
1,075,298	-		GFF4158	0.85	+0.0
1,075,358	+				+0.9
1,075,359	-				-0.0
1,075,359	-				-0.1
1,075,392	+				-0.2
1,075,392	+				-1.1
1,075,392	+				-0.2
1,075,392	+				-0.3
1,075,392	+				-0.2
1,075,392	+				+1.5
1,075,392	+				+0.4
1,075,392	+				+0.0
1,075,392	+				-0.8
1,075,392	+				-0.0
1,075,392	+				-0.4
1,075,393	-				+0.2
1,075,404	+				-0.4
1,075,405	-				+0.2
1,075,405	-				-0.8
1,075,405	-				-0.5
1,075,435	+				-0.1
1,075,436	-				-0.5
1,075,436	-				-1.0
1,075,437	+				-2.1
1,075,437	+				+0.4
1,075,444	-				+0.1
1,075,450	+				+0.3
1,075,451	-				+0.0
1,075,453	-				-0.9
1,075,481	+				+0.2
1,075,589	+				+0.7
1,075,589	+				-0.0
1,075,589	+				+0.5
1,075,590	-				+1.0
1,075,590	-				-0.0
1,075,596	+				-0.1
1,075,673	+				-0.1
1,075,673	+				-0.2
1,075,674	-				-0.7
1,075,674	-				+0.5
1,075,902	+		GFF4159	0.55	+0.4
1,075,902	+		GFF4159	0.55	-0.2
1,075,903	-		GFF4159	0.55	+0.1
1,075,903	-		GFF4159	0.55	+0.0
1,075,988	+		GFF4159	0.79	+0.6
1,075,989	-		GFF4159	0.80	-0.6
1,076,019	-		GFF4159	0.88	+0.1
1,076,091	+				-0.5
1,076,092	-				+0.2
1,076,092	-				-0.3
1,076,177	+				-0.1
1,076,177	+				-0.3
1,076,177	+				-0.5
1,076,177	+				-0.4
1,076,177	+				-0.2
1,076,178	-				-0.5
1,076,178	-				+0.1
1,076,178	-				+0.2
1,076,178	-				-0.2
1,076,178	-				+0.0
1,076,178	-				+0.3
1,076,294	-				-0.4
1,076,294	-				-0.3
1,076,300	+				+0.1
1,076,336	+				+0.1
1,076,337	-				+0.3
1,076,337	-				+1.1
1,076,337	-				+0.7
1,076,422	+				+0.5
1,076,437	+				-1.0
1,076,437	+				+0.1
1,076,438	-				+0.0
1,076,443	+				+0.1
1,076,443	+				+0.0
1,076,443	+				+0.2
1,076,443	+				-0.8
1,076,443	+				-0.4
1,076,444	-				+0.2
1,076,444	-				-0.5
1,076,444	-				-0.2
1,076,444	-				+0.1
1,076,444	-				+0.1
1,076,482	+		GFF4160	0.11	-0.9
1,076,482	+		GFF4160	0.11	-0.1
1,076,482	+		GFF4160	0.11	+0.3
1,076,483	-		GFF4160	0.11	-0.5
1,076,503	+		GFF4160	0.14	-0.1
1,076,504	-		GFF4160	0.14	+0.1
1,076,634	-		GFF4160	0.30	+0.1
1,076,634	-		GFF4160	0.30	-0.3
1,076,634	-		GFF4160	0.30	+0.2
1,076,644	+		GFF4160	0.31	+0.5
1,076,809	+		GFF4160	0.52	-0.8
1,076,809	+		GFF4160	0.52	-0.2
1,076,810	-		GFF4160	0.52	+0.3
1,076,810	-		GFF4160	0.52	+1.5
1,076,810	-		GFF4160	0.52	-2.4
1,076,810	-		GFF4160	0.52	+0.0
1,076,810	-		GFF4160	0.52	+0.6
1,076,810	-		GFF4160	0.52	-0.8
1,076,815	+		GFF4160	0.53	-0.2
1,076,815	+		GFF4160	0.53	+0.2
1,077,052	+		GFF4160	0.82	+0.1