Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4133

Experiment: Ying_Others16 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 2
1,043,624	+				-0.9
1,043,624	+				+0.7
1,043,624	+				-0.6
1,043,625	-				+0.3
1,043,774	-				-0.1
1,043,797	+				+0.3
1,043,797	+				-0.9
1,043,798	-				-0.6
1,043,918	+				-0.1
1,043,919	-				-0.1
1,043,919	-				+0.2
1,044,243	-		GFF4132	0.69	+0.7
1,044,374	+				+1.5
1,044,374	+				+0.5
1,044,374	+				-0.1
1,044,374	+				-0.3
1,044,374	+				+0.1
1,044,374	+				-0.5
1,044,375	-				+0.0
1,044,375	-				+0.1
1,044,375	-				-0.3
1,044,375	-				-0.1
1,044,375	-				+0.1
1,044,375	-				+1.2
1,044,375	-				-1.1
1,044,375	-				-0.2
1,044,375	-				-1.0
1,044,375	-				-0.1
1,044,419	+				-0.3
1,044,419	+				-0.3
1,044,419	+				-0.1
1,044,448	+				+0.3
1,044,448	+				+0.3
1,044,448	+				+0.1
1,044,449	-				+0.0
1,044,479	-				-0.1
1,044,715	+				+0.0
1,044,715	+				+0.7
1,044,715	+				-0.5
1,044,716	-				-0.5
1,044,716	-				-1.0
1,044,716	-				-1.9
1,044,716	-				-0.0
1,044,988	+		GFF4133	0.20	-0.1
1,044,988	+		GFF4133	0.20	+0.1
1,044,988	+		GFF4133	0.20	+0.0
1,044,988	+		GFF4133	0.20	-0.4
1,044,988	+		GFF4133	0.20	+0.5
1,044,989	-		GFF4133	0.20	+0.9
1,045,753	+		GFF4133	0.53	-0.4
1,045,753	+		GFF4133	0.53	-0.5
1,046,711	-				-0.7
1,046,746	+				+0.3
1,046,746	+				-1.0
1,046,746	+				-0.5
1,046,746	+				-0.2
1,046,746	+				-0.8
1,046,746	+				-1.3
1,046,746	+				+0.5
1,046,747	-				+0.2
1,046,748	+				-0.4
1,046,748	+				+0.3
1,046,748	+				-0.2
1,046,748	+				-0.3
1,046,748	+				-0.2
1,046,748	+				-0.3
1,046,748	+				-0.2
1,046,748	+				+0.5
1,046,749	-				-0.3
1,046,749	-				-0.9
1,046,749	-				-0.0
1,046,749	-				-0.2
1,046,749	-				+0.3
1,046,749	-				-0.6
1,046,854	+				-1.1
1,046,994	+				-2.0
1,046,995	-				-0.1
1,047,054	+				-0.7
1,047,054	+				+0.0
1,047,054	+				+0.2
1,047,054	+				+0.8
1,047,054	+				-0.5
1,047,054	+				-0.3
1,047,054	+				+0.3
1,047,054	+				-0.2
1,047,054	+				-2.1
1,047,054	+				+1.7
1,047,054	+				-0.5
1,047,055	-				-0.3
1,047,055	-				-0.3
1,047,055	-				+0.4
1,047,055	-				+1.2
1,047,055	-				-0.6
1,047,055	-				+0.1
1,047,055	-				+0.1
1,047,055	-				-1.0
1,047,060	+				+0.0
1,047,060	+				+0.2
1,047,060	+				+0.1
1,047,060	+				-0.4
1,047,060	+				-0.0
1,047,060	+				+0.4
1,047,060	+				+0.2
1,047,061	-				+1.5
1,047,061	-				-0.1
1,047,061	-				-0.7
1,047,061	-				+0.1
1,047,061	-				+0.2
1,047,061	-				+0.2
1,047,098	-				-0.3
1,047,098	-				+0.3
1,047,098	-				-0.1
1,047,230	-		GFF4135	0.12	+0.5
1,047,304	+		GFF4135	0.17	-0.5
1,047,304	+		GFF4135	0.17	-1.8
1,047,304	+		GFF4135	0.17	-1.1
1,047,304	+		GFF4135	0.17	-1.1
1,047,305	-		GFF4135	0.17	+0.8
1,047,305	-		GFF4135	0.17	-0.1
1,047,305	-		GFF4135	0.17	-0.0
1,047,307	+		GFF4135	0.17	-1.0
1,047,307	+		GFF4135	0.17	-0.3
1,047,307	+		GFF4135	0.17	-0.8
1,047,307	+		GFF4135	0.17	+0.7
1,047,307	+		GFF4135	0.17	+0.5
1,047,307	+		GFF4135	0.17	-2.1
1,047,307	+		GFF4135	0.17	+0.0
1,047,308	-		GFF4135	0.17	+1.5
1,047,308	-		GFF4135	0.17	-0.9
1,047,439	+		GFF4135	0.26	+0.3
1,047,439	+		GFF4135	0.26	+0.1
1,047,440	-		GFF4135	0.26	+1.3
1,047,544	+		GFF4135	0.33	+0.1
1,047,544	+		GFF4135	0.33	+0.1
1,047,545	-		GFF4135	0.33	+0.4
1,047,545	-		GFF4135	0.33	+1.1
1,047,650	-		GFF4135	0.41	-0.4
1,047,650	-		GFF4135	0.41	+0.3
1,047,686	-		GFF4135	0.43	-0.3
1,047,739	+		GFF4135	0.47	-0.3
1,047,739	+		GFF4135	0.47	+0.2
1,047,739	+		GFF4135	0.47	-0.9
1,047,739	+		GFF4135	0.47	-0.5
1,047,739	+		GFF4135	0.47	+0.4
1,047,740	-		GFF4135	0.47	+0.7
1,047,740	-		GFF4135	0.47	-1.4
1,047,742	+		GFF4135	0.47	-0.5
1,047,743	-		GFF4135	0.47	-1.7
1,047,743	-		GFF4135	0.47	+0.0
1,047,776	-		GFF4135	0.49	-0.9
1,047,823	+		GFF4135	0.53	-0.0
1,047,823	+		GFF4135	0.53	+0.5
1,047,823	+		GFF4135	0.53	+0.2
1,047,824	-		GFF4135	0.53	-0.4