Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4130

Experiment: Ying_Others16 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 2
1,040,373	+				-0.1
1,040,634	+		GFF4129	0.33	+0.8
1,040,635	-		GFF4129	0.33	-0.5
1,040,635	-		GFF4129	0.33	-0.5
1,040,649	+		GFF4129	0.34	-1.5
1,040,649	+		GFF4129	0.34	+0.6
1,040,790	+		GFF4129	0.48	+0.9
1,040,791	-		GFF4129	0.48	+0.5
1,040,791	-		GFF4129	0.48	+0.6
1,040,791	-		GFF4129	0.48	+0.6
1,040,791	-		GFF4129	0.48	-0.6
1,041,063	+		GFF4129	0.76	+0.1
1,041,063	+		GFF4129	0.76	+0.3
1,041,064	-		GFF4129	0.76	-0.7
1,041,081	+		GFF4129	0.78	-0.4
1,041,082	-		GFF4129	0.78	+0.4
1,041,989	+				-0.3
1,041,989	+				-0.3
1,041,990	-				-0.5
1,041,995	+				+1.2
1,041,996	-				-0.1
1,041,996	-				-0.4
1,042,110	-				-0.5
1,042,110	-				-0.2
1,042,367	+		GFF4131	0.18	+0.4
1,042,367	+		GFF4131	0.18	+0.2
1,042,389	-		GFF4131	0.19	+0.4
1,042,389	-		GFF4131	0.19	+0.3
1,042,595	+		GFF4131	0.32	-0.1
1,042,595	+		GFF4131	0.32	+0.2
1,042,595	+		GFF4131	0.32	+0.2
1,042,595	+		GFF4131	0.32	+0.3
1,042,596	-		GFF4131	0.32	-0.9
1,042,680	-		GFF4131	0.38	-0.2
1,042,680	-		GFF4131	0.38	-0.3
1,042,868	+		GFF4131	0.50	+0.5
1,042,868	+		GFF4131	0.50	-1.4
1,042,868	+		GFF4131	0.50	+0.5
1,042,869	-		GFF4131	0.50	-0.4
1,042,869	-		GFF4131	0.50	-0.3
1,042,869	-		GFF4131	0.50	+1.2
1,042,869	-		GFF4131	0.50	-0.3