Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4070 and GFF4071 are separated by 10 nucleotides GFF4071 and GFF4072 are separated by 70 nucleotides GFF4072 and GFF4073 are separated by 41 nucleotides GFF4073 and GFF4074 are separated by 2 nucleotides
GFF4070 - Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-), at 985,179 to 985,904
GFF4070
GFF4071 - Flagellar basal-body P-ring formation protein FlgA, at 985,915 to 986,535
GFF4071
GFF4072 - Flagellar basal-body rod protein FlgB, at 986,606 to 986,968
GFF4072
GFF4073 - Flagellar basal-body rod protein FlgC, at 987,010 to 987,390
GFF4073
GFF4074 - Flagellar basal-body rod modification protein FlgD, at 987,393 to 988,061
GFF4074
Position (kb) 986
987 Strain fitness (log2 ratio) -1
0
1 at 985.851 kb on + strand at 986.638 kb on - strand at 986.814 kb on - strand, within GFF4072 at 986.845 kb on + strand, within GFF4072 at 986.966 kb on + strand at 986.967 kb on - strand at 986.967 kb on - strand at 986.967 kb on - strand at 987.095 kb on - strand, within GFF4073 at 987.127 kb on + strand, within GFF4073 at 987.256 kb on + strand, within GFF4073 at 987.256 kb on + strand, within GFF4073 at 987.256 kb on + strand, within GFF4073 at 987.256 kb on + strand, within GFF4073 at 987.257 kb on - strand, within GFF4073 at 987.257 kb on - strand, within GFF4073 at 987.257 kb on - strand, within GFF4073 at 987.257 kb on - strand, within GFF4073 at 987.257 kb on - strand, within GFF4073 at 987.805 kb on + strand, within GFF4074 at 987.806 kb on - strand, within GFF4074 at 987.883 kb on - strand, within GFF4074
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 985,851 + -0.1 986,638 - -0.8 986,814 - GFF4072 0.57 -0.0 986,845 + GFF4072 0.66 +0.7 986,966 + +0.8 986,967 - -1.0 986,967 - +0.2 986,967 - +0.4 987,095 - GFF4073 0.22 -0.0 987,127 + GFF4073 0.31 +0.2 987,256 + GFF4073 0.65 -0.1 987,256 + GFF4073 0.65 -0.2 987,256 + GFF4073 0.65 -0.1 987,256 + GFF4073 0.65 -1.3 987,257 - GFF4073 0.65 +1.1 987,257 - GFF4073 0.65 -0.0 987,257 - GFF4073 0.65 -0.2 987,257 - GFF4073 0.65 -0.2 987,257 - GFF4073 0.65 +0.5 987,805 + GFF4074 0.62 +0.3 987,806 - GFF4074 0.62 +1.0 987,883 - GFF4074 0.73 -0.3
Or see this region's nucleotide sequence