Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4009 and GFF4010 are separated by 26 nucleotides GFF4010 and GFF4011 are separated by 19 nucleotides GFF4011 and GFF4012 are separated by 12 nucleotides
GFF4009 - DNA polymerase III alpha subunit (EC 2.7.7.7), at 924,216 to 927,323
GFF4009
GFF4010 - Homoserine/homoserine lactone efflux protein, at 927,350 to 927,970
GFF4010
GFF4011 - two-component response regulator, at 927,990 to 928,583
GFF4011
GFF4012 - Two-component hybrid sensor and regulator, at 928,596 to 930,353
GFF4012
Position (kb) 927
928
929 Strain fitness (log2 ratio) -1
0
1 at 927.214 kb on - strand at 927.337 kb on + strand at 927.374 kb on + strand at 927.374 kb on + strand at 927.374 kb on + strand at 927.375 kb on - strand at 927.375 kb on - strand at 927.375 kb on - strand at 927.375 kb on - strand at 927.375 kb on - strand at 927.593 kb on + strand, within GFF4010 at 927.593 kb on + strand, within GFF4010 at 927.594 kb on - strand, within GFF4010 at 927.594 kb on - strand, within GFF4010 at 928.282 kb on - strand, within GFF4011 at 928.282 kb on - strand, within GFF4011 at 928.777 kb on - strand, within GFF4012 at 928.777 kb on - strand, within GFF4012 at 928.777 kb on - strand, within GFF4012 at 928.777 kb on - strand, within GFF4012 at 928.777 kb on - strand, within GFF4012 at 928.797 kb on + strand, within GFF4012 at 928.797 kb on + strand, within GFF4012 at 928.797 kb on + strand, within GFF4012 at 928.798 kb on - strand, within GFF4012 at 929.065 kb on - strand, within GFF4012
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 927,214 - +0.2 927,337 + -0.1 927,374 + +0.3 927,374 + -0.3 927,374 + -1.1 927,375 - -0.2 927,375 - -0.5 927,375 - +0.5 927,375 - -0.2 927,375 - +0.3 927,593 + GFF4010 0.39 -0.0 927,593 + GFF4010 0.39 +0.3 927,594 - GFF4010 0.39 +0.3 927,594 - GFF4010 0.39 -0.8 928,282 - GFF4011 0.49 -1.4 928,282 - GFF4011 0.49 +0.3 928,777 - GFF4012 0.10 +0.8 928,777 - GFF4012 0.10 +0.4 928,777 - GFF4012 0.10 -0.6 928,777 - GFF4012 0.10 -0.2 928,777 - GFF4012 0.10 -0.1 928,797 + GFF4012 0.11 -0.2 928,797 + GFF4012 0.11 +0.0 928,797 + GFF4012 0.11 -0.6 928,798 - GFF4012 0.11 +0.0 929,065 - GFF4012 0.27 +0.5
Or see this region's nucleotide sequence