Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3910 and GFF3911 are separated by 18 nucleotides GFF3911 and GFF3912 are separated by 27 nucleotides
GFF3910 - Ferrichrome-iron receptor, at 822,091 to 824,298
GFF3910
GFF3911 - hypothetical protein, at 824,317 to 824,523
GFF3911
GFF3912 - TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins, at 824,551 to 826,971
GFF3912
Position (kb) 824
825 Strain fitness (log2 ratio) -2
-1
0
1 at 823.442 kb on + strand, within GFF3910 at 823.442 kb on + strand, within GFF3910 at 823.443 kb on - strand, within GFF3910 at 823.443 kb on - strand, within GFF3910 at 823.496 kb on + strand, within GFF3910 at 823.496 kb on + strand, within GFF3910 at 823.496 kb on + strand, within GFF3910 at 823.497 kb on - strand, within GFF3910 at 823.565 kb on + strand, within GFF3910 at 823.565 kb on + strand, within GFF3910 at 823.566 kb on - strand, within GFF3910 at 823.566 kb on - strand, within GFF3910 at 823.566 kb on - strand, within GFF3910 at 823.566 kb on - strand, within GFF3910 at 823.622 kb on + strand, within GFF3910 at 824.106 kb on + strand at 824.156 kb on + strand at 824.157 kb on - strand at 824.157 kb on - strand at 824.157 kb on - strand at 824.157 kb on - strand at 824.416 kb on - strand, within GFF3911 at 824.606 kb on + strand at 824.607 kb on - strand at 824.607 kb on - strand at 824.616 kb on - strand at 824.646 kb on - strand at 824.684 kb on + strand at 824.753 kb on + strand at 824.754 kb on - strand at 824.754 kb on - strand at 824.781 kb on - strand at 824.781 kb on - strand at 824.781 kb on - strand at 824.781 kb on - strand at 824.789 kb on + strand at 824.789 kb on + strand at 824.972 kb on + strand, within GFF3912 at 824.972 kb on + strand, within GFF3912 at 824.973 kb on - strand, within GFF3912 at 824.973 kb on - strand, within GFF3912 at 824.973 kb on - strand, within GFF3912 at 824.973 kb on - strand, within GFF3912 at 824.978 kb on + strand, within GFF3912 at 824.978 kb on + strand, within GFF3912 at 824.978 kb on + strand, within GFF3912 at 824.979 kb on - strand, within GFF3912 at 824.979 kb on - strand, within GFF3912 at 824.979 kb on - strand, within GFF3912 at 825.224 kb on + strand, within GFF3912 at 825.225 kb on - strand, within GFF3912 at 825.279 kb on - strand, within GFF3912 at 825.279 kb on - strand, within GFF3912 at 825.279 kb on - strand, within GFF3912 at 825.324 kb on - strand, within GFF3912 at 825.333 kb on - strand, within GFF3912 at 825.398 kb on + strand, within GFF3912 at 825.398 kb on + strand, within GFF3912 at 825.407 kb on + strand, within GFF3912 at 825.407 kb on + strand, within GFF3912 at 825.408 kb on - strand, within GFF3912 at 825.452 kb on + strand, within GFF3912
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 823,442 + GFF3910 0.61 -0.3 823,442 + GFF3910 0.61 -1.0 823,443 - GFF3910 0.61 -0.1 823,443 - GFF3910 0.61 -0.5 823,496 + GFF3910 0.64 +0.8 823,496 + GFF3910 0.64 +0.1 823,496 + GFF3910 0.64 -0.1 823,497 - GFF3910 0.64 +0.4 823,565 + GFF3910 0.67 -1.5 823,565 + GFF3910 0.67 -0.3 823,566 - GFF3910 0.67 -0.1 823,566 - GFF3910 0.67 -0.3 823,566 - GFF3910 0.67 -0.3 823,566 - GFF3910 0.67 -0.6 823,622 + GFF3910 0.69 -0.8 824,106 + -0.4 824,156 + -1.0 824,157 - -0.2 824,157 - -0.6 824,157 - +0.5 824,157 - +0.0 824,416 - GFF3911 0.48 +0.3 824,606 + -0.1 824,607 - -1.9 824,607 - +0.9 824,616 - -0.1 824,646 - +0.2 824,684 + -0.4 824,753 + -0.9 824,754 - -0.2 824,754 - +0.7 824,781 - -0.1 824,781 - +0.2 824,781 - +0.1 824,781 - +0.2 824,789 + +0.3 824,789 + -0.2 824,972 + GFF3912 0.17 +0.2 824,972 + GFF3912 0.17 +0.0 824,973 - GFF3912 0.17 -0.1 824,973 - GFF3912 0.17 -0.5 824,973 - GFF3912 0.17 +0.0 824,973 - GFF3912 0.17 -0.4 824,978 + GFF3912 0.18 -2.2 824,978 + GFF3912 0.18 +0.2 824,978 + GFF3912 0.18 +0.3 824,979 - GFF3912 0.18 +0.1 824,979 - GFF3912 0.18 -0.6 824,979 - GFF3912 0.18 +0.2 825,224 + GFF3912 0.28 +0.8 825,225 - GFF3912 0.28 -0.5 825,279 - GFF3912 0.30 -0.2 825,279 - GFF3912 0.30 -0.3 825,279 - GFF3912 0.30 -0.2 825,324 - GFF3912 0.32 +0.1 825,333 - GFF3912 0.32 -0.1 825,398 + GFF3912 0.35 +0.8 825,398 + GFF3912 0.35 +0.4 825,407 + GFF3912 0.35 -1.3 825,407 + GFF3912 0.35 -0.7 825,408 - GFF3912 0.35 -0.2 825,452 + GFF3912 0.37 -0.1
Or see this region's nucleotide sequence