Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3867 and GFF3868 are separated by 155 nucleotides GFF3868 and GFF3869 are separated by 70 nucleotides
GFF3867 - Plasmid replication/partition related protein, at 779,128 to 779,967
GFF3867
GFF3868 - hypothetical protein, at 780,123 to 780,605
GFF3868
GFF3869 - Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-), at 780,676 to 782,313
GFF3869
Position (kb) 780
781 Strain fitness (log2 ratio) -2
-1
0
1
2 at 779.933 kb on + strand at 779.933 kb on + strand at 779.934 kb on - strand at 779.934 kb on - strand at 779.934 kb on - strand at 780.007 kb on + strand at 780.007 kb on + strand at 780.008 kb on - strand at 780.071 kb on + strand at 780.405 kb on + strand, within GFF3868 at 780.405 kb on + strand, within GFF3868 at 780.405 kb on + strand, within GFF3868 at 780.405 kb on + strand, within GFF3868 at 780.406 kb on - strand, within GFF3868 at 780.406 kb on - strand, within GFF3868 at 780.406 kb on - strand, within GFF3868 at 780.406 kb on - strand, within GFF3868 at 780.406 kb on - strand, within GFF3868 at 780.406 kb on - strand, within GFF3868 at 780.432 kb on + strand, within GFF3868 at 780.432 kb on + strand, within GFF3868 at 780.433 kb on - strand, within GFF3868 at 780.433 kb on - strand, within GFF3868 at 780.633 kb on + strand at 780.633 kb on + strand at 780.634 kb on - strand at 780.916 kb on + strand, within GFF3869 at 780.917 kb on - strand, within GFF3869 at 780.920 kb on - strand, within GFF3869 at 781.180 kb on + strand, within GFF3869 at 781.180 kb on + strand, within GFF3869 at 781.180 kb on + strand, within GFF3869 at 781.180 kb on + strand, within GFF3869 at 781.225 kb on + strand, within GFF3869 at 781.226 kb on - strand, within GFF3869
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 779,933 + +0.2 779,933 + +0.5 779,934 - +0.1 779,934 - +0.7 779,934 - +0.8 780,007 + +0.5 780,007 + -0.3 780,008 - +0.4 780,071 + -2.0 780,405 + GFF3868 0.58 -0.2 780,405 + GFF3868 0.58 +2.0 780,405 + GFF3868 0.58 -0.1 780,405 + GFF3868 0.58 -0.7 780,406 - GFF3868 0.59 -0.8 780,406 - GFF3868 0.59 -0.4 780,406 - GFF3868 0.59 +0.1 780,406 - GFF3868 0.59 +0.2 780,406 - GFF3868 0.59 +0.1 780,406 - GFF3868 0.59 -0.2 780,432 + GFF3868 0.64 -0.5 780,432 + GFF3868 0.64 +0.1 780,433 - GFF3868 0.64 -0.8 780,433 - GFF3868 0.64 -0.9 780,633 + +0.1 780,633 + +0.0 780,634 - +0.1 780,916 + GFF3869 0.15 +1.0 780,917 - GFF3869 0.15 -0.8 780,920 - GFF3869 0.15 +0.3 781,180 + GFF3869 0.31 -2.0 781,180 + GFF3869 0.31 +0.5 781,180 + GFF3869 0.31 -0.3 781,180 + GFF3869 0.31 +0.4 781,225 + GFF3869 0.34 +0.2 781,226 - GFF3869 0.34 +1.0
Or see this region's nucleotide sequence