Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3818 and GFF3819 are separated by 9 nucleotides GFF3819 and GFF3820 overlap by 4 nucleotides GFF3820 and GFF3821 are separated by 81 nucleotides
GFF3818 - hypothetical protein, at 721,878 to 722,180
GFF3818
GFF3819 - DNA-binding response regulator, at 722,190 to 722,897
GFF3819
GFF3820 - Adenylate cyclase (EC 4.6.1.1), at 722,894 to 724,270
GFF3820
GFF3821 - hypothetical protein, at 724,352 to 725,218
GFF3821
Position (kb) 722
723
724
725 Strain fitness (log2 ratio) -2
-1
0
1 at 722.247 kb on + strand at 722.247 kb on + strand at 722.247 kb on + strand at 722.247 kb on + strand at 722.247 kb on + strand at 722.247 kb on + strand at 722.248 kb on - strand at 722.248 kb on - strand at 722.248 kb on - strand at 722.481 kb on + strand, within GFF3819 at 722.482 kb on - strand, within GFF3819 at 722.482 kb on - strand, within GFF3819 at 722.778 kb on + strand, within GFF3819 at 722.779 kb on - strand, within GFF3819 at 722.865 kb on + strand at 723.074 kb on + strand, within GFF3820 at 723.074 kb on + strand, within GFF3820 at 723.075 kb on - strand, within GFF3820 at 723.075 kb on - strand, within GFF3820 at 723.391 kb on + strand, within GFF3820 at 723.392 kb on - strand, within GFF3820 at 723.434 kb on + strand, within GFF3820 at 724.019 kb on + strand, within GFF3820 at 724.020 kb on - strand, within GFF3820 at 724.020 kb on - strand, within GFF3820 at 724.020 kb on - strand, within GFF3820 at 724.049 kb on + strand, within GFF3820 at 724.050 kb on - strand, within GFF3820 at 724.050 kb on - strand, within GFF3820 at 724.050 kb on - strand, within GFF3820 at 724.169 kb on + strand at 724.170 kb on - strand at 724.268 kb on + strand at 724.268 kb on + strand at 724.268 kb on + strand at 724.508 kb on + strand, within GFF3821 at 724.508 kb on + strand, within GFF3821 at 724.509 kb on - strand, within GFF3821 at 724.509 kb on - strand, within GFF3821 at 724.509 kb on - strand, within GFF3821 at 724.509 kb on - strand, within GFF3821 at 724.509 kb on - strand, within GFF3821 at 724.509 kb on - strand, within GFF3821 at 724.553 kb on + strand, within GFF3821 at 724.553 kb on + strand, within GFF3821 at 724.553 kb on + strand, within GFF3821 at 724.553 kb on + strand, within GFF3821 at 724.553 kb on + strand, within GFF3821 at 724.553 kb on + strand, within GFF3821 at 724.553 kb on + strand, within GFF3821 at 724.554 kb on - strand, within GFF3821 at 724.554 kb on - strand, within GFF3821 at 724.554 kb on - strand, within GFF3821 at 724.554 kb on - strand, within GFF3821 at 724.598 kb on + strand, within GFF3821 at 724.599 kb on - strand, within GFF3821 at 724.610 kb on + strand, within GFF3821 at 725.038 kb on - strand, within GFF3821 at 725.090 kb on + strand, within GFF3821 at 725.090 kb on + strand, within GFF3821 at 725.090 kb on + strand, within GFF3821 at 725.091 kb on - strand, within GFF3821 at 725.128 kb on - strand, within GFF3821 at 725.128 kb on - strand, within GFF3821 at 725.128 kb on - strand, within GFF3821 at 725.153 kb on - strand at 725.225 kb on + strand at 725.225 kb on + strand at 725.225 kb on + strand at 725.225 kb on + strand at 725.225 kb on + strand at 725.225 kb on + strand at 725.226 kb on - strand at 725.226 kb on - strand at 725.226 kb on - strand at 725.269 kb on + strand at 725.269 kb on + strand at 725.269 kb on + strand at 725.269 kb on + strand at 725.269 kb on + strand at 725.270 kb on - strand at 725.270 kb on - strand at 725.270 kb on - strand at 725.270 kb on - strand at 725.270 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 722,247 + -0.1 722,247 + -0.2 722,247 + -0.1 722,247 + -0.2 722,247 + +0.2 722,247 + +0.2 722,248 - +0.5 722,248 - +0.2 722,248 - -0.3 722,481 + GFF3819 0.41 +0.2 722,482 - GFF3819 0.41 -0.6 722,482 - GFF3819 0.41 +0.3 722,778 + GFF3819 0.83 +0.3 722,779 - GFF3819 0.83 +0.8 722,865 + +0.4 723,074 + GFF3820 0.13 -0.2 723,074 + GFF3820 0.13 +0.1 723,075 - GFF3820 0.13 +0.6 723,075 - GFF3820 0.13 +0.0 723,391 + GFF3820 0.36 -0.3 723,392 - GFF3820 0.36 +1.7 723,434 + GFF3820 0.39 +1.6 724,019 + GFF3820 0.82 +0.8 724,020 - GFF3820 0.82 +0.6 724,020 - GFF3820 0.82 -1.4 724,020 - GFF3820 0.82 +0.2 724,049 + GFF3820 0.84 +0.3 724,050 - GFF3820 0.84 -0.3 724,050 - GFF3820 0.84 +1.6 724,050 - GFF3820 0.84 +0.6 724,169 + +0.0 724,170 - -0.0 724,268 + +0.6 724,268 + -1.4 724,268 + -0.5 724,508 + GFF3821 0.18 -0.1 724,508 + GFF3821 0.18 +0.0 724,509 - GFF3821 0.18 +0.4 724,509 - GFF3821 0.18 +0.4 724,509 - GFF3821 0.18 -0.6 724,509 - GFF3821 0.18 -0.1 724,509 - GFF3821 0.18 +0.4 724,509 - GFF3821 0.18 -0.1 724,553 + GFF3821 0.23 -0.0 724,553 + GFF3821 0.23 +0.4 724,553 + GFF3821 0.23 +1.6 724,553 + GFF3821 0.23 -0.2 724,553 + GFF3821 0.23 -0.6 724,553 + GFF3821 0.23 -0.4 724,553 + GFF3821 0.23 +1.0 724,554 - GFF3821 0.23 +0.3 724,554 - GFF3821 0.23 -0.5 724,554 - GFF3821 0.23 -0.7 724,554 - GFF3821 0.23 -1.0 724,598 + GFF3821 0.28 +0.3 724,599 - GFF3821 0.28 -0.2 724,610 + GFF3821 0.30 +0.3 725,038 - GFF3821 0.79 -0.8 725,090 + GFF3821 0.85 -2.0 725,090 + GFF3821 0.85 -0.2 725,090 + GFF3821 0.85 +1.4 725,091 - GFF3821 0.85 +0.2 725,128 - GFF3821 0.90 -0.3 725,128 - GFF3821 0.90 +0.2 725,128 - GFF3821 0.90 +0.2 725,153 - +0.3 725,225 + +0.2 725,225 + -0.8 725,225 + -0.0 725,225 + +0.2 725,225 + +0.1 725,225 + -0.6 725,226 - -0.1 725,226 - -0.3 725,226 - -0.2 725,269 + +0.2 725,269 + -0.3 725,269 + +0.4 725,269 + -0.7 725,269 + +0.3 725,270 - -0.2 725,270 - +0.3 725,270 - +0.5 725,270 - -0.3 725,270 - +0.1
Or see this region's nucleotide sequence