Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3776

Experiment: Ying_Others16 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 2
672,847	+		GFF3775	0.61	+0.9
672,847	+		GFF3775	0.61	-0.4
672,847	+		GFF3775	0.61	+0.4
672,848	-		GFF3775	0.61	-0.4
672,856	+		GFF3775	0.61	-0.6
672,857	-		GFF3775	0.61	-0.2
672,922	+		GFF3775	0.65	-0.2
672,922	+		GFF3775	0.65	-0.5
673,000	+		GFF3775	0.69	-0.1
673,007	-		GFF3775	0.70	-0.2
673,007	-		GFF3775	0.70	+0.1
673,231	+		GFF3775	0.83	-0.1
673,232	-		GFF3775	0.83	-0.2
673,659	+		GFF3776	0.14	+0.4
673,659	+		GFF3776	0.14	+0.2
673,660	-		GFF3776	0.14	+1.1
673,660	-		GFF3776	0.14	+0.1
673,660	-		GFF3776	0.14	-1.7
674,312	-				+0.3
674,809	-		GFF3777	0.29	+0.1
675,205	+		GFF3777	0.52	+0.3
675,206	-		GFF3777	0.52	+0.3
675,206	-		GFF3777	0.52	-0.1