Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3698 and GFF3699 are separated by 119 nucleotides GFF3699 and GFF3700 are separated by 89 nucleotides
GFF3698 - NAD-specific glutamate dehydrogenase (EC 1.4.1.2); NADP-specific glutamate dehydrogenase (EC 1.4.1.4), at 587,638 to 588,969
GFF3698
GFF3699 - ABC transporter ATP-binding protein, at 589,089 to 590,873
GFF3699
GFF3700 - hypothetical protein, at 590,963 to 592,165
GFF3700
Position (kb) 589
590
591 Strain fitness (log2 ratio) -1
0
1 at 588.337 kb on + strand, within GFF3698 at 588.407 kb on + strand, within GFF3698 at 588.407 kb on + strand, within GFF3698 at 588.408 kb on - strand, within GFF3698 at 588.827 kb on + strand, within GFF3698 at 588.857 kb on + strand at 588.893 kb on + strand at 588.893 kb on + strand at 588.894 kb on - strand at 589.020 kb on + strand at 589.020 kb on + strand at 589.020 kb on + strand at 589.080 kb on + strand at 589.081 kb on - strand at 589.123 kb on + strand at 589.429 kb on + strand, within GFF3699 at 589.429 kb on + strand, within GFF3699 at 589.657 kb on + strand, within GFF3699 at 589.658 kb on - strand, within GFF3699 at 589.658 kb on - strand, within GFF3699 at 589.660 kb on + strand, within GFF3699 at 589.661 kb on - strand, within GFF3699 at 589.661 kb on - strand, within GFF3699 at 589.661 kb on - strand, within GFF3699 at 589.936 kb on + strand, within GFF3699 at 589.936 kb on + strand, within GFF3699 at 589.936 kb on + strand, within GFF3699 at 589.937 kb on - strand, within GFF3699 at 589.937 kb on - strand, within GFF3699 at 589.981 kb on + strand, within GFF3699 at 589.981 kb on + strand, within GFF3699 at 589.981 kb on + strand, within GFF3699 at 589.981 kb on + strand, within GFF3699 at 589.982 kb on - strand, within GFF3699 at 590.047 kb on + strand, within GFF3699 at 590.047 kb on + strand, within GFF3699 at 590.048 kb on - strand, within GFF3699 at 590.191 kb on + strand, within GFF3699 at 590.191 kb on + strand, within GFF3699 at 590.192 kb on - strand, within GFF3699 at 590.354 kb on - strand, within GFF3699 at 590.536 kb on + strand, within GFF3699 at 590.537 kb on - strand, within GFF3699 at 590.590 kb on + strand, within GFF3699 at 590.925 kb on + strand at 590.926 kb on - strand at 590.926 kb on - strand at 590.926 kb on - strand at 590.926 kb on - strand at 591.062 kb on + strand at 591.062 kb on + strand at 591.116 kb on + strand, within GFF3700 at 591.116 kb on + strand, within GFF3700 at 591.116 kb on + strand, within GFF3700 at 591.116 kb on + strand, within GFF3700 at 591.117 kb on - strand, within GFF3700 at 591.117 kb on - strand, within GFF3700 at 591.117 kb on - strand, within GFF3700 at 591.117 kb on - strand, within GFF3700 at 591.117 kb on - strand, within GFF3700 at 591.149 kb on + strand, within GFF3700 at 591.254 kb on + strand, within GFF3700 at 591.255 kb on - strand, within GFF3700 at 591.255 kb on - strand, within GFF3700 at 591.255 kb on - strand, within GFF3700 at 591.255 kb on - strand, within GFF3700 at 591.593 kb on + strand, within GFF3700 at 591.608 kb on + strand, within GFF3700 at 591.609 kb on - strand, within GFF3700 at 591.659 kb on + strand, within GFF3700 at 591.659 kb on + strand, within GFF3700 at 591.660 kb on - strand, within GFF3700 at 591.830 kb on + strand, within GFF3700 at 591.830 kb on + strand, within GFF3700 at 591.830 kb on + strand, within GFF3700 at 591.830 kb on + strand, within GFF3700 at 591.830 kb on + strand, within GFF3700 at 591.831 kb on - strand, within GFF3700
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 588,337 + GFF3698 0.52 -0.2 588,407 + GFF3698 0.58 +0.3 588,407 + GFF3698 0.58 -0.3 588,408 - GFF3698 0.58 -0.4 588,827 + GFF3698 0.89 +0.7 588,857 + +0.3 588,893 + +0.9 588,893 + -0.6 588,894 - -0.5 589,020 + -0.2 589,020 + +0.6 589,020 + +1.3 589,080 + +0.2 589,081 - -0.5 589,123 + -1.2 589,429 + GFF3699 0.19 +0.3 589,429 + GFF3699 0.19 +1.1 589,657 + GFF3699 0.32 +0.6 589,658 - GFF3699 0.32 -0.3 589,658 - GFF3699 0.32 -0.1 589,660 + GFF3699 0.32 -0.0 589,661 - GFF3699 0.32 +1.5 589,661 - GFF3699 0.32 -0.3 589,661 - GFF3699 0.32 +1.1 589,936 + GFF3699 0.47 -0.3 589,936 + GFF3699 0.47 -0.7 589,936 + GFF3699 0.47 -0.4 589,937 - GFF3699 0.48 +0.0 589,937 - GFF3699 0.48 -0.4 589,981 + GFF3699 0.50 -0.4 589,981 + GFF3699 0.50 +1.1 589,981 + GFF3699 0.50 +0.2 589,981 + GFF3699 0.50 -0.9 589,982 - GFF3699 0.50 -0.3 590,047 + GFF3699 0.54 -0.4 590,047 + GFF3699 0.54 +1.3 590,048 - GFF3699 0.54 +0.1 590,191 + GFF3699 0.62 +0.4 590,191 + GFF3699 0.62 -0.6 590,192 - GFF3699 0.62 +0.8 590,354 - GFF3699 0.71 -0.4 590,536 + GFF3699 0.81 +0.7 590,537 - GFF3699 0.81 -0.3 590,590 + GFF3699 0.84 +0.4 590,925 + -0.0 590,926 - -0.1 590,926 - -0.0 590,926 - +0.1 590,926 - -0.4 591,062 + -1.2 591,062 + -0.0 591,116 + GFF3700 0.13 -1.2 591,116 + GFF3700 0.13 +0.3 591,116 + GFF3700 0.13 +0.6 591,116 + GFF3700 0.13 -0.1 591,117 - GFF3700 0.13 -0.0 591,117 - GFF3700 0.13 +0.0 591,117 - GFF3700 0.13 -0.1 591,117 - GFF3700 0.13 -0.1 591,117 - GFF3700 0.13 -0.3 591,149 + GFF3700 0.15 -0.2 591,254 + GFF3700 0.24 +0.3 591,255 - GFF3700 0.24 -0.4 591,255 - GFF3700 0.24 +1.3 591,255 - GFF3700 0.24 +0.4 591,255 - GFF3700 0.24 -0.0 591,593 + GFF3700 0.52 +0.4 591,608 + GFF3700 0.54 -1.2 591,609 - GFF3700 0.54 -0.0 591,659 + GFF3700 0.58 +0.7 591,659 + GFF3700 0.58 -0.4 591,660 - GFF3700 0.58 -1.2 591,830 + GFF3700 0.72 -0.3 591,830 + GFF3700 0.72 -0.7 591,830 + GFF3700 0.72 +0.1 591,830 + GFF3700 0.72 +0.2 591,830 + GFF3700 0.72 -0.6 591,831 - GFF3700 0.72 -0.3
Or see this region's nucleotide sequence