Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3666 and GFF3667 are separated by 46 nucleotides GFF3667 and GFF3668 are separated by 126 nucleotides
GFF3666 - Response regulator NasT, at 553,117 to 554,388
GFF3666
GFF3667 - Serine/threonine protein kinase (EC 2.7.11.1), at 554,435 to 556,192
GFF3667
GFF3668 - Nitrate/nitrite transporter, at 556,319 to 557,533
GFF3668
Position (kb) 554
555
556
557 Strain fitness (log2 ratio) -1
0
1 at 553.744 kb on + strand, within GFF3666 at 553.745 kb on - strand, within GFF3666 at 554.356 kb on + strand at 554.356 kb on + strand at 554.813 kb on + strand, within GFF3667 at 554.930 kb on + strand, within GFF3667 at 554.931 kb on - strand, within GFF3667 at 555.266 kb on + strand, within GFF3667 at 555.266 kb on + strand, within GFF3667 at 555.267 kb on - strand, within GFF3667 at 555.299 kb on + strand, within GFF3667 at 555.464 kb on + strand, within GFF3667 at 555.464 kb on + strand, within GFF3667 at 555.851 kb on + strand, within GFF3667 at 555.851 kb on + strand, within GFF3667 at 555.851 kb on + strand, within GFF3667 at 555.878 kb on + strand, within GFF3667 at 555.896 kb on + strand, within GFF3667 at 555.911 kb on + strand, within GFF3667 at 555.911 kb on + strand, within GFF3667 at 555.914 kb on + strand, within GFF3667 at 556.190 kb on + strand at 556.440 kb on + strand at 556.440 kb on + strand at 556.440 kb on + strand at 556.441 kb on - strand, within GFF3668 at 556.822 kb on - strand, within GFF3668 at 556.824 kb on + strand, within GFF3668 at 556.825 kb on - strand, within GFF3668 at 556.827 kb on + strand, within GFF3668 at 556.827 kb on + strand, within GFF3668 at 556.828 kb on - strand, within GFF3668 at 556.828 kb on - strand, within GFF3668 at 556.878 kb on + strand, within GFF3668 at 556.878 kb on + strand, within GFF3668 at 556.879 kb on - strand, within GFF3668 at 557.043 kb on + strand, within GFF3668
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 553,744 + GFF3666 0.49 -0.7 553,745 - GFF3666 0.49 +0.3 554,356 + +0.7 554,356 + +1.5 554,813 + GFF3667 0.22 +0.3 554,930 + GFF3667 0.28 +1.0 554,931 - GFF3667 0.28 +1.2 555,266 + GFF3667 0.47 -0.1 555,266 + GFF3667 0.47 +0.5 555,267 - GFF3667 0.47 +0.2 555,299 + GFF3667 0.49 +0.4 555,464 + GFF3667 0.59 +0.9 555,464 + GFF3667 0.59 -0.3 555,851 + GFF3667 0.81 -0.3 555,851 + GFF3667 0.81 -0.1 555,851 + GFF3667 0.81 +0.5 555,878 + GFF3667 0.82 +1.3 555,896 + GFF3667 0.83 +0.8 555,911 + GFF3667 0.84 -0.3 555,911 + GFF3667 0.84 +1.3 555,914 + GFF3667 0.84 +0.6 556,190 + -0.7 556,440 + +0.3 556,440 + +0.6 556,440 + -0.4 556,441 - GFF3668 0.10 -0.6 556,822 - GFF3668 0.41 +0.1 556,824 + GFF3668 0.42 +0.1 556,825 - GFF3668 0.42 +0.2 556,827 + GFF3668 0.42 +0.2 556,827 + GFF3668 0.42 +0.6 556,828 - GFF3668 0.42 +0.2 556,828 - GFF3668 0.42 +0.7 556,878 + GFF3668 0.46 -0.4 556,878 + GFF3668 0.46 -0.7 556,879 - GFF3668 0.46 -0.4 557,043 + GFF3668 0.60 -0.1
Or see this region's nucleotide sequence