Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3650 and GFF3651 are separated by 9 nucleotides GFF3651 and GFF3652 are separated by 3 nucleotides GFF3652 and GFF3653 are separated by 19 nucleotides GFF3653 and GFF3654 overlap by 4 nucleotides
GFF3650 - tRNA:Cm32/Um32 methyltransferase, at 537,439 to 538,254
GFF3650
GFF3651 - Serine acetyltransferase (EC 2.3.1.30), at 538,264 to 539,034
GFF3651
GFF3652 - FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8), at 539,038 to 539,514
GFF3652
GFF3653 - Molybdopterin biosynthesis molybdochelatase MogA, at 539,534 to 540,142
GFF3653
GFF3654 - FIG138315: Putative alpha helix protein, at 540,139 to 540,786
GFF3654
Position (kb) 539
540 Strain fitness (log2 ratio) -1
0
1 at 538.252 kb on + strand at 538.828 kb on + strand, within GFF3651 at 539.032 kb on + strand at 539.032 kb on + strand at 539.032 kb on + strand at 539.033 kb on - strand at 539.420 kb on + strand, within GFF3652 at 539.420 kb on + strand, within GFF3652 at 539.602 kb on - strand, within GFF3653 at 539.602 kb on - strand, within GFF3653 at 539.602 kb on - strand, within GFF3653 at 539.628 kb on + strand, within GFF3653 at 539.629 kb on - strand, within GFF3653 at 540.057 kb on + strand, within GFF3653 at 540.057 kb on + strand, within GFF3653 at 540.057 kb on + strand, within GFF3653 at 540.057 kb on + strand, within GFF3653 at 540.058 kb on - strand, within GFF3653 at 540.225 kb on - strand, within GFF3654
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 538,252 + +0.0 538,828 + GFF3651 0.73 +0.8 539,032 + +1.0 539,032 + -0.1 539,032 + -0.3 539,033 - +0.3 539,420 + GFF3652 0.80 +0.5 539,420 + GFF3652 0.80 +1.2 539,602 - GFF3653 0.11 -1.7 539,602 - GFF3653 0.11 -1.0 539,602 - GFF3653 0.11 +0.1 539,628 + GFF3653 0.15 +0.8 539,629 - GFF3653 0.16 -0.4 540,057 + GFF3653 0.86 +0.4 540,057 + GFF3653 0.86 -0.3 540,057 + GFF3653 0.86 +0.9 540,057 + GFF3653 0.86 -1.0 540,058 - GFF3653 0.86 +0.2 540,225 - GFF3654 0.13 +0.2
Or see this region's nucleotide sequence