Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3593 and GFF3594 are separated by 5 nucleotides GFF3594 and GFF3595 are separated by 35 nucleotides GFF3595 and GFF3596 are separated by 124 nucleotides
GFF3593 - Autolysin sensor kinase (EC 2.7.3.-), at 480,773 to 481,855
GFF3593
GFF3594 - hypothetical protein, at 481,861 to 482,151
GFF3594
GFF3595 - membrane protein, putative, at 482,187 to 482,618
GFF3595
GFF3596 - Sensory box histidine kinase, at 482,743 to 484,617
GFF3596
Position (kb) 481
482
483 Strain fitness (log2 ratio) -1
0
1 at 481.113 kb on + strand, within GFF3593 at 481.156 kb on - strand, within GFF3593 at 481.440 kb on + strand, within GFF3593 at 481.441 kb on - strand, within GFF3593 at 481.441 kb on - strand, within GFF3593 at 481.441 kb on - strand, within GFF3593 at 481.443 kb on + strand, within GFF3593 at 481.444 kb on - strand, within GFF3593 at 481.570 kb on - strand, within GFF3593 at 481.570 kb on - strand, within GFF3593 at 481.570 kb on - strand, within GFF3593 at 481.580 kb on + strand, within GFF3593 at 481.756 kb on + strand at 481.756 kb on + strand at 481.994 kb on + strand, within GFF3594 at 481.994 kb on + strand, within GFF3594 at 482.075 kb on + strand, within GFF3594 at 482.075 kb on + strand, within GFF3594 at 482.075 kb on + strand, within GFF3594 at 482.076 kb on - strand, within GFF3594 at 482.230 kb on + strand at 482.281 kb on + strand, within GFF3595 at 482.282 kb on - strand, within GFF3595 at 482.428 kb on + strand, within GFF3595 at 482.474 kb on - strand, within GFF3595 at 482.990 kb on + strand, within GFF3596
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 481,113 + GFF3593 0.31 +1.2 481,156 - GFF3593 0.35 +0.2 481,440 + GFF3593 0.62 -0.6 481,441 - GFF3593 0.62 -0.2 481,441 - GFF3593 0.62 +0.0 481,441 - GFF3593 0.62 -0.3 481,443 + GFF3593 0.62 +0.1 481,444 - GFF3593 0.62 +0.7 481,570 - GFF3593 0.74 -0.7 481,570 - GFF3593 0.74 -0.0 481,570 - GFF3593 0.74 +0.4 481,580 + GFF3593 0.75 -0.1 481,756 + +0.5 481,756 + +0.7 481,994 + GFF3594 0.46 -0.0 481,994 + GFF3594 0.46 +0.6 482,075 + GFF3594 0.74 +0.9 482,075 + GFF3594 0.74 -0.5 482,075 + GFF3594 0.74 -0.9 482,076 - GFF3594 0.74 +0.6 482,230 + +0.6 482,281 + GFF3595 0.22 +0.0 482,282 - GFF3595 0.22 +0.2 482,428 + GFF3595 0.56 +0.9 482,474 - GFF3595 0.66 -0.0 482,990 + GFF3596 0.13 -1.1
Or see this region's nucleotide sequence