Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3572 and GFF3573 are separated by 24 nucleotides GFF3573 and GFF3574 are separated by 43 nucleotides GFF3574 and GFF3575 are separated by 95 nucleotides GFF3575 and GFF3576 are separated by 154 nucleotides
GFF3572 - protein of unknown function DUF1332, at 460,244 to 460,735
GFF3572
GFF3573 - SAM-dependent methyltransferase (EC 2.1.1.-), at 460,760 to 461,374
GFF3573
GFF3574 - hypothetical protein, at 461,418 to 462,638
GFF3574
GFF3575 - hypothetical protein, at 462,734 to 463,114
GFF3575
GFF3576 - FIG074102: hypothetical protein, at 463,269 to 464,048
GFF3576
Position (kb) 461
462
463 Strain fitness (log2 ratio) -2
-1
0
1 at 460.474 kb on - strand, within GFF3572 at 460.953 kb on + strand, within GFF3573 at 460.962 kb on + strand, within GFF3573 at 460.963 kb on - strand, within GFF3573 at 460.963 kb on - strand, within GFF3573 at 461.061 kb on + strand, within GFF3573 at 461.061 kb on + strand, within GFF3573 at 461.061 kb on + strand, within GFF3573 at 461.061 kb on + strand, within GFF3573 at 461.061 kb on + strand, within GFF3573 at 461.062 kb on - strand, within GFF3573 at 461.062 kb on - strand, within GFF3573 at 461.062 kb on - strand, within GFF3573 at 461.062 kb on - strand, within GFF3573 at 461.062 kb on - strand, within GFF3573 at 461.062 kb on - strand, within GFF3573 at 461.818 kb on + strand, within GFF3574 at 461.833 kb on + strand, within GFF3574 at 461.833 kb on + strand, within GFF3574 at 461.834 kb on - strand, within GFF3574 at 461.834 kb on - strand, within GFF3574 at 461.834 kb on - strand, within GFF3574 at 461.834 kb on - strand, within GFF3574 at 462.097 kb on + strand, within GFF3574 at 462.098 kb on - strand, within GFF3574 at 462.098 kb on - strand, within GFF3574 at 462.339 kb on + strand, within GFF3574 at 462.339 kb on + strand, within GFF3574 at 462.339 kb on + strand, within GFF3574 at 462.340 kb on - strand, within GFF3574 at 462.383 kb on - strand, within GFF3574 at 462.383 kb on - strand, within GFF3574 at 462.383 kb on - strand, within GFF3574 at 462.386 kb on - strand, within GFF3574 at 462.648 kb on - strand at 462.680 kb on - strand at 462.957 kb on + strand, within GFF3575 at 462.958 kb on - strand, within GFF3575 at 463.227 kb on - strand at 463.258 kb on - strand at 463.258 kb on - strand at 463.487 kb on - strand, within GFF3576 at 463.542 kb on - strand, within GFF3576 at 463.620 kb on + strand, within GFF3576 at 463.621 kb on - strand, within GFF3576
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 460,474 - GFF3572 0.47 -0.2 460,953 + GFF3573 0.31 -0.1 460,962 + GFF3573 0.33 +0.2 460,963 - GFF3573 0.33 +0.0 460,963 - GFF3573 0.33 +0.3 461,061 + GFF3573 0.49 -0.1 461,061 + GFF3573 0.49 +0.0 461,061 + GFF3573 0.49 +0.3 461,061 + GFF3573 0.49 +0.7 461,061 + GFF3573 0.49 -0.3 461,062 - GFF3573 0.49 -0.1 461,062 - GFF3573 0.49 +0.6 461,062 - GFF3573 0.49 +0.3 461,062 - GFF3573 0.49 -0.2 461,062 - GFF3573 0.49 -0.7 461,062 - GFF3573 0.49 -0.8 461,818 + GFF3574 0.33 -1.2 461,833 + GFF3574 0.34 -0.4 461,833 + GFF3574 0.34 +0.7 461,834 - GFF3574 0.34 +0.4 461,834 - GFF3574 0.34 +1.2 461,834 - GFF3574 0.34 +0.8 461,834 - GFF3574 0.34 -0.1 462,097 + GFF3574 0.56 -0.2 462,098 - GFF3574 0.56 -0.5 462,098 - GFF3574 0.56 -0.2 462,339 + GFF3574 0.75 +0.6 462,339 + GFF3574 0.75 +0.3 462,339 + GFF3574 0.75 -1.4 462,340 - GFF3574 0.76 -0.3 462,383 - GFF3574 0.79 +0.2 462,383 - GFF3574 0.79 -0.3 462,383 - GFF3574 0.79 -0.2 462,386 - GFF3574 0.79 +0.1 462,648 - +0.4 462,680 - +0.4 462,957 + GFF3575 0.59 -1.4 462,958 - GFF3575 0.59 -0.4 463,227 - -2.2 463,258 - -0.4 463,258 - -0.2 463,487 - GFF3576 0.28 +0.4 463,542 - GFF3576 0.35 +1.2 463,620 + GFF3576 0.45 -0.5 463,621 - GFF3576 0.45 -0.1
Or see this region's nucleotide sequence