Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3540 and GFF3541 are separated by 80 nucleotides GFF3541 and GFF3542 are separated by 41 nucleotides GFF3542 and GFF3543 are separated by 11 nucleotides GFF3543 and GFF3544 are separated by 3 nucleotides
GFF3540 - Copper tolerance protein, at 431,080 to 432,456
GFF3540
GFF3541 - hypothetical protein, at 432,537 to 432,893
GFF3541
GFF3542 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46), at 432,935 to 433,993
GFF3542
GFF3543 - hypothetical protein, at 434,005 to 434,151
GFF3543
GFF3544 - Acetyl-coenzyme A synthetase (EC 6.2.1.1), at 434,155 to 435,891
GFF3544
Position (kb) 432
433
434 Strain fitness (log2 ratio) -1
0
1
2 at 433.335 kb on + strand, within GFF3542 at 433.335 kb on + strand, within GFF3542 at 433.336 kb on - strand, within GFF3542 at 433.624 kb on - strand, within GFF3542 at 434.028 kb on + strand, within GFF3543 at 434.029 kb on - strand, within GFF3543 at 434.030 kb on - strand, within GFF3543 at 434.119 kb on - strand, within GFF3543 at 434.119 kb on - strand, within GFF3543 at 434.344 kb on + strand, within GFF3544 at 434.344 kb on + strand, within GFF3544 at 434.536 kb on + strand, within GFF3544 at 434.537 kb on - strand, within GFF3544 at 434.537 kb on - strand, within GFF3544 at 434.656 kb on + strand, within GFF3544 at 434.837 kb on - strand, within GFF3544
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 433,335 + GFF3542 0.38 +0.4 433,335 + GFF3542 0.38 +0.9 433,336 - GFF3542 0.38 -0.2 433,624 - GFF3542 0.65 -0.6 434,028 + GFF3543 0.16 +0.1 434,029 - GFF3543 0.16 -0.4 434,030 - GFF3543 0.17 +0.8 434,119 - GFF3543 0.78 +1.9 434,119 - GFF3543 0.78 -0.1 434,344 + GFF3544 0.11 -0.4 434,344 + GFF3544 0.11 -1.4 434,536 + GFF3544 0.22 -0.4 434,537 - GFF3544 0.22 +0.8 434,537 - GFF3544 0.22 +0.4 434,656 + GFF3544 0.29 +0.1 434,837 - GFF3544 0.39 -1.4
Or see this region's nucleotide sequence