Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3511 and GFF3512 are separated by 5 nucleotides GFF3512 and GFF3513 are separated by 52 nucleotides GFF3513 and GFF3514 overlap by 11 nucleotides
GFF3511 - Lactoylglutathione lyase (EC 4.4.1.5), at 398,485 to 398,931
GFF3511
GFF3512 - uncharacterized domain 1, at 398,937 to 399,479
GFF3512
GFF3513 - Transcriptional regulator, MarR family, at 399,532 to 399,996
GFF3513
GFF3514 - Transmembrane transport protein, at 399,986 to 401,227
GFF3514
Position (kb) 399
400 Strain fitness (log2 ratio) -1
0
1
2 at 398.541 kb on - strand, within GFF3511 at 398.684 kb on + strand, within GFF3511 at 398.684 kb on + strand, within GFF3511 at 398.684 kb on + strand, within GFF3511 at 398.685 kb on - strand, within GFF3511 at 398.717 kb on + strand, within GFF3511 at 398.717 kb on + strand, within GFF3511 at 398.735 kb on + strand, within GFF3511 at 398.735 kb on + strand, within GFF3511 at 398.735 kb on + strand, within GFF3511 at 398.736 kb on - strand, within GFF3511 at 398.756 kb on + strand, within GFF3511 at 398.756 kb on + strand, within GFF3511 at 398.756 kb on + strand, within GFF3511 at 398.756 kb on + strand, within GFF3511 at 398.756 kb on + strand, within GFF3511 at 398.757 kb on - strand, within GFF3511 at 398.757 kb on - strand, within GFF3511 at 398.795 kb on + strand, within GFF3511 at 398.816 kb on + strand, within GFF3511 at 398.816 kb on + strand, within GFF3511 at 398.816 kb on + strand, within GFF3511 at 398.817 kb on - strand, within GFF3511 at 398.822 kb on + strand, within GFF3511 at 398.822 kb on + strand, within GFF3511 at 398.822 kb on + strand, within GFF3511 at 398.823 kb on - strand, within GFF3511 at 398.873 kb on + strand, within GFF3511 at 398.920 kb on + strand at 398.921 kb on - strand at 398.921 kb on - strand at 398.921 kb on - strand at 398.921 kb on - strand at 398.921 kb on - strand at 398.921 kb on - strand at 398.921 kb on - strand at 398.938 kb on + strand at 398.986 kb on + strand at 398.986 kb on + strand at 398.986 kb on + strand at 399.085 kb on + strand, within GFF3512 at 399.085 kb on + strand, within GFF3512 at 399.086 kb on - strand, within GFF3512 at 399.086 kb on - strand, within GFF3512 at 399.086 kb on - strand, within GFF3512 at 399.130 kb on + strand, within GFF3512 at 399.130 kb on + strand, within GFF3512 at 399.131 kb on - strand, within GFF3512 at 399.197 kb on - strand, within GFF3512 at 399.230 kb on - strand, within GFF3512 at 399.230 kb on - strand, within GFF3512 at 399.439 kb on + strand at 399.439 kb on + strand at 399.439 kb on + strand at 399.440 kb on - strand at 399.440 kb on - strand at 399.622 kb on + strand, within GFF3513 at 399.623 kb on - strand, within GFF3513 at 399.623 kb on - strand, within GFF3513 at 399.665 kb on - strand, within GFF3513 at 399.665 kb on - strand, within GFF3513 at 399.665 kb on - strand, within GFF3513 at 400.013 kb on + strand at 400.265 kb on + strand, within GFF3514 at 400.265 kb on + strand, within GFF3514 at 400.266 kb on - strand, within GFF3514 at 400.266 kb on - strand, within GFF3514 at 400.266 kb on - strand, within GFF3514 at 400.266 kb on - strand, within GFF3514 at 400.266 kb on - strand, within GFF3514 at 400.652 kb on + strand, within GFF3514 at 400.652 kb on + strand, within GFF3514 at 400.652 kb on + strand, within GFF3514 at 400.652 kb on + strand, within GFF3514 at 400.652 kb on + strand, within GFF3514 at 400.653 kb on - strand, within GFF3514 at 400.862 kb on + strand, within GFF3514 at 400.862 kb on + strand, within GFF3514 at 400.862 kb on + strand, within GFF3514 at 400.863 kb on - strand, within GFF3514
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 398,541 - GFF3511 0.13 +0.3 398,684 + GFF3511 0.45 +0.0 398,684 + GFF3511 0.45 -0.3 398,684 + GFF3511 0.45 -0.2 398,685 - GFF3511 0.45 -0.3 398,717 + GFF3511 0.52 -0.5 398,717 + GFF3511 0.52 -0.0 398,735 + GFF3511 0.56 +0.2 398,735 + GFF3511 0.56 +0.5 398,735 + GFF3511 0.56 -0.1 398,736 - GFF3511 0.56 -0.3 398,756 + GFF3511 0.61 +0.1 398,756 + GFF3511 0.61 +0.4 398,756 + GFF3511 0.61 -0.2 398,756 + GFF3511 0.61 -0.2 398,756 + GFF3511 0.61 +0.4 398,757 - GFF3511 0.61 -0.2 398,757 - GFF3511 0.61 +0.2 398,795 + GFF3511 0.69 -0.0 398,816 + GFF3511 0.74 +0.5 398,816 + GFF3511 0.74 -0.5 398,816 + GFF3511 0.74 -0.2 398,817 - GFF3511 0.74 +1.3 398,822 + GFF3511 0.75 +0.4 398,822 + GFF3511 0.75 -0.3 398,822 + GFF3511 0.75 +0.0 398,823 - GFF3511 0.76 -0.1 398,873 + GFF3511 0.87 -0.3 398,920 + +2.0 398,921 - -0.0 398,921 - -0.4 398,921 - -0.2 398,921 - -0.3 398,921 - +0.1 398,921 - -1.4 398,921 - -1.3 398,938 + +0.1 398,986 + -0.4 398,986 + -0.7 398,986 + -1.1 399,085 + GFF3512 0.27 -0.7 399,085 + GFF3512 0.27 +0.0 399,086 - GFF3512 0.27 +1.1 399,086 - GFF3512 0.27 -0.3 399,086 - GFF3512 0.27 +0.3 399,130 + GFF3512 0.36 +0.5 399,130 + GFF3512 0.36 +0.3 399,131 - GFF3512 0.36 +0.8 399,197 - GFF3512 0.48 +0.1 399,230 - GFF3512 0.54 +0.0 399,230 - GFF3512 0.54 -0.2 399,439 + -0.1 399,439 + -0.1 399,439 + -0.3 399,440 - -0.8 399,440 - +0.1 399,622 + GFF3513 0.19 +0.2 399,623 - GFF3513 0.20 +0.3 399,623 - GFF3513 0.20 -0.1 399,665 - GFF3513 0.29 -0.3 399,665 - GFF3513 0.29 +1.6 399,665 - GFF3513 0.29 +0.5 400,013 + +0.6 400,265 + GFF3514 0.22 -0.1 400,265 + GFF3514 0.22 +0.2 400,266 - GFF3514 0.23 -0.8 400,266 - GFF3514 0.23 -0.3 400,266 - GFF3514 0.23 +2.1 400,266 - GFF3514 0.23 -0.4 400,266 - GFF3514 0.23 +0.4 400,652 + GFF3514 0.54 -0.5 400,652 + GFF3514 0.54 -1.3 400,652 + GFF3514 0.54 -0.6 400,652 + GFF3514 0.54 +1.1 400,652 + GFF3514 0.54 -0.5 400,653 - GFF3514 0.54 -0.2 400,862 + GFF3514 0.71 -0.1 400,862 + GFF3514 0.71 +0.9 400,862 + GFF3514 0.71 -0.4 400,863 - GFF3514 0.71 +0.8
Or see this region's nucleotide sequence