Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3474 and GFF3475 are separated by 16 nucleotides GFF3475 and GFF3476 overlap by 4 nucleotides GFF3476 and GFF3477 are separated by 17 nucleotides
GFF3474 - hypothetical protein, at 355,456 to 356,646
GFF3474
GFF3475 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 356,663 to 357,430
GFF3475
GFF3476 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 357,427 to 358,143
GFF3476
GFF3477 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 358,161 to 359,033
GFF3477
Position (kb) 356
357
358 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 355.691 kb on + strand, within GFF3474 at 355.691 kb on + strand, within GFF3474 at 355.711 kb on + strand, within GFF3474 at 355.787 kb on + strand, within GFF3474 at 355.787 kb on + strand, within GFF3474 at 355.838 kb on + strand, within GFF3474 at 355.855 kb on - strand, within GFF3474 at 355.855 kb on - strand, within GFF3474 at 356.230 kb on + strand, within GFF3474 at 356.230 kb on + strand, within GFF3474 at 356.389 kb on + strand, within GFF3474 at 356.436 kb on + strand, within GFF3474 at 356.619 kb on + strand at 356.742 kb on + strand, within GFF3475 at 356.743 kb on - strand, within GFF3475 at 356.917 kb on + strand, within GFF3475 at 357.677 kb on + strand, within GFF3476 at 357.678 kb on - strand, within GFF3476 at 358.052 kb on - strand, within GFF3476 at 358.142 kb on - strand at 358.142 kb on - strand at 358.212 kb on + strand at 358.212 kb on + strand at 358.212 kb on + strand at 358.213 kb on - strand at 358.242 kb on - strand at 358.245 kb on + strand at 358.246 kb on - strand at 358.302 kb on + strand, within GFF3477
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 355,691 + GFF3474 0.20 -1.1 355,691 + GFF3474 0.20 -2.5 355,711 + GFF3474 0.21 +0.4 355,787 + GFF3474 0.28 -0.5 355,787 + GFF3474 0.28 -0.2 355,838 + GFF3474 0.32 +0.3 355,855 - GFF3474 0.34 +0.9 355,855 - GFF3474 0.34 -0.8 356,230 + GFF3474 0.65 +1.3 356,230 + GFF3474 0.65 +0.2 356,389 + GFF3474 0.78 -0.6 356,436 + GFF3474 0.82 +0.4 356,619 + -0.6 356,742 + GFF3475 0.10 +0.1 356,743 - GFF3475 0.10 +0.5 356,917 + GFF3475 0.33 -0.7 357,677 + GFF3476 0.35 +1.2 357,678 - GFF3476 0.35 +0.1 358,052 - GFF3476 0.87 -0.0 358,142 - -3.5 358,142 - -0.7 358,212 + +0.3 358,212 + -1.2 358,212 + -0.6 358,213 - +0.5 358,242 - -0.2 358,245 + -0.8 358,246 - -0.0 358,302 + GFF3477 0.16 +0.5
Or see this region's nucleotide sequence