Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3440 and GFF3441 are separated by 44 nucleotides GFF3441 and GFF3442 are separated by 117 nucleotides GFF3442 and GFF3443 are separated by 601 nucleotides
GFF3440 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5), at 321,455 to 322,090
GFF3440
GFF3441 - Cation transport protein chaC, at 322,135 to 322,689
GFF3441
GFF3442 - Cytochrome c oxidase polypeptide II (EC 1.9.3.1), at 322,807 to 323,319
GFF3442
GFF3443 - Shufflon-specific DNA recombinase, at 323,921 to 324,847
GFF3443
Position (kb) 322
323
324 Strain fitness (log2 ratio) -2
-1
0
1 at 322.101 kb on + strand at 322.101 kb on + strand at 322.101 kb on + strand at 322.102 kb on - strand at 322.102 kb on - strand at 322.102 kb on - strand at 322.102 kb on - strand at 322.217 kb on + strand, within GFF3441 at 322.217 kb on + strand, within GFF3441 at 322.217 kb on + strand, within GFF3441 at 322.295 kb on + strand, within GFF3441 at 322.296 kb on - strand, within GFF3441 at 322.320 kb on + strand, within GFF3441 at 322.380 kb on - strand, within GFF3441 at 322.512 kb on - strand, within GFF3441 at 322.512 kb on - strand, within GFF3441 at 322.623 kb on - strand, within GFF3441 at 322.757 kb on + strand at 322.757 kb on + strand at 322.758 kb on - strand at 322.758 kb on - strand at 322.758 kb on - strand at 322.785 kb on + strand at 322.785 kb on + strand at 322.786 kb on - strand at 322.786 kb on - strand at 322.902 kb on + strand, within GFF3442 at 323.029 kb on + strand, within GFF3442 at 323.030 kb on - strand, within GFF3442 at 323.481 kb on + strand at 323.482 kb on - strand at 323.483 kb on + strand at 323.496 kb on + strand at 323.497 kb on - strand at 323.507 kb on + strand at 323.508 kb on - strand at 323.655 kb on + strand at 323.655 kb on + strand at 323.656 kb on - strand at 323.656 kb on - strand at 323.693 kb on + strand at 323.693 kb on + strand at 323.693 kb on + strand at 323.694 kb on - strand at 323.694 kb on - strand at 323.694 kb on - strand at 323.694 kb on - strand at 323.694 kb on - strand at 323.933 kb on + strand at 323.933 kb on + strand at 323.933 kb on + strand at 323.933 kb on + strand at 323.934 kb on - strand at 323.934 kb on - strand at 323.951 kb on + strand at 323.952 kb on - strand at 324.099 kb on - strand, within GFF3443 at 324.279 kb on + strand, within GFF3443 at 324.290 kb on + strand, within GFF3443 at 324.291 kb on - strand, within GFF3443
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 322,101 + -0.0 322,101 + +0.3 322,101 + +0.1 322,102 - +0.9 322,102 - -0.2 322,102 - -0.1 322,102 - -0.6 322,217 + GFF3441 0.15 +0.0 322,217 + GFF3441 0.15 -2.3 322,217 + GFF3441 0.15 -1.2 322,295 + GFF3441 0.29 -0.3 322,296 - GFF3441 0.29 -1.4 322,320 + GFF3441 0.33 +0.9 322,380 - GFF3441 0.44 -0.3 322,512 - GFF3441 0.68 -1.1 322,512 - GFF3441 0.68 -1.7 322,623 - GFF3441 0.88 -1.4 322,757 + -0.7 322,757 + -0.4 322,758 - -0.2 322,758 - +0.1 322,758 - +0.0 322,785 + +0.1 322,785 + +0.3 322,786 - +1.0 322,786 - +0.4 322,902 + GFF3442 0.19 +0.4 323,029 + GFF3442 0.43 -0.3 323,030 - GFF3442 0.43 +0.9 323,481 + -0.4 323,482 - -0.3 323,483 + -0.1 323,496 + +0.1 323,497 - -0.1 323,507 + -0.3 323,508 - +1.0 323,655 + -0.1 323,655 + +1.3 323,656 - +0.9 323,656 - -0.3 323,693 + +0.0 323,693 + -0.4 323,693 + -0.4 323,694 - -1.4 323,694 - -0.1 323,694 - +0.6 323,694 - +0.1 323,694 - +1.1 323,933 + +0.5 323,933 + -0.0 323,933 + +0.6 323,933 + -0.2 323,934 - -0.0 323,934 - +0.4 323,951 + -0.7 323,952 - +0.1 324,099 - GFF3443 0.19 -0.0 324,279 + GFF3443 0.39 -1.8 324,290 + GFF3443 0.40 -0.0 324,291 - GFF3443 0.40 -0.3
Or see this region's nucleotide sequence