Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF341 and GFF342 are separated by 150 nucleotides GFF342 and GFF343 are separated by 8 nucleotides GFF343 and GFF344 are separated by 1 nucleotides
GFF341 - hypothetical protein, at 2,621 to 2,938
GFF341
GFF342 - transcriptional regulator, Crp/Fnr family, at 3,089 to 3,823
GFF342
GFF343 - tRNA pseudouridine synthase A (EC 4.2.1.70), at 3,832 to 4,959
GFF343
GFF344 - Guanine deaminase (EC 3.5.4.3); Hydroxydechloroatrazine ethylaminohydrolase (EC 3.5.99.3), at 4,961 to 6,370
GFF344
Position (kb) 3
4
5 Strain fitness (log2 ratio) -2
-1
0
1 at 3.004 kb on + strand at 3.004 kb on + strand at 3.005 kb on - strand at 3.061 kb on + strand at 3.061 kb on + strand at 3.285 kb on - strand, within GFF342 at 3.413 kb on + strand, within GFF342 at 3.413 kb on + strand, within GFF342 at 3.414 kb on - strand, within GFF342 at 3.419 kb on + strand, within GFF342 at 3.683 kb on + strand, within GFF342 at 4.384 kb on + strand, within GFF343 at 4.384 kb on + strand, within GFF343 at 4.384 kb on + strand, within GFF343 at 4.384 kb on + strand, within GFF343 at 4.624 kb on + strand, within GFF343 at 4.625 kb on - strand, within GFF343 at 5.204 kb on + strand, within GFF344 at 5.204 kb on + strand, within GFF344 at 5.204 kb on + strand, within GFF344 at 5.205 kb on - strand, within GFF344 at 5.205 kb on - strand, within GFF344 at 5.378 kb on + strand, within GFF344 at 5.378 kb on + strand, within GFF344
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 3,004 + -0.0 3,004 + -2.3 3,005 - +0.2 3,061 + +0.4 3,061 + +1.2 3,285 - GFF342 0.27 +0.6 3,413 + GFF342 0.44 +0.6 3,413 + GFF342 0.44 +0.2 3,414 - GFF342 0.44 +0.9 3,419 + GFF342 0.45 +0.4 3,683 + GFF342 0.81 -0.2 4,384 + GFF343 0.49 +1.1 4,384 + GFF343 0.49 +0.9 4,384 + GFF343 0.49 +0.2 4,384 + GFF343 0.49 +0.4 4,624 + GFF343 0.70 +0.3 4,625 - GFF343 0.70 -0.7 5,204 + GFF344 0.17 -0.0 5,204 + GFF344 0.17 -0.5 5,204 + GFF344 0.17 +0.6 5,205 - GFF344 0.17 +0.0 5,205 - GFF344 0.17 -0.1 5,378 + GFF344 0.30 +1.1 5,378 + GFF344 0.30 +0.4
Or see this region's nucleotide sequence