Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3423 and GFF3424 are separated by 30 nucleotides GFF3424 and GFF3425 are separated by 121 nucleotides GFF3425 and GFF3426 overlap by 8 nucleotides GFF3426 and GFF3427 overlap by 12 nucleotides
GFF3423 - Proposed peptidoglycan lipid II flippase MurJ, at 306,947 to 308,506
GFF3423
GFF3424 - Protein sirB1, at 308,537 to 309,394
GFF3424
GFF3425 - Nucleoside-diphosphate-sugar epimerases, at 309,516 to 310,148
GFF3425
GFF3426 - hypothetical protein, at 310,141 to 310,275
GFF3426
GFF3427 - Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1), at 310,264 to 311,901
GFF3427
Position (kb) 308
309
310 Strain fitness (log2 ratio) -1
0
1
2 at 308.509 kb on + strand at 308.509 kb on + strand at 308.509 kb on + strand at 308.509 kb on + strand at 308.509 kb on + strand at 308.509 kb on + strand at 308.510 kb on - strand at 308.510 kb on - strand at 308.510 kb on - strand at 308.550 kb on - strand at 308.580 kb on - strand at 308.580 kb on - strand at 308.813 kb on + strand, within GFF3424 at 308.813 kb on + strand, within GFF3424 at 308.813 kb on + strand, within GFF3424 at 308.813 kb on + strand, within GFF3424 at 308.814 kb on - strand, within GFF3424 at 308.814 kb on - strand, within GFF3424 at 308.814 kb on - strand, within GFF3424 at 308.814 kb on - strand, within GFF3424 at 308.816 kb on + strand, within GFF3424 at 308.817 kb on - strand, within GFF3424 at 308.817 kb on - strand, within GFF3424 at 308.817 kb on - strand, within GFF3424 at 308.817 kb on - strand, within GFF3424 at 308.817 kb on - strand, within GFF3424 at 308.817 kb on - strand, within GFF3424 at 309.050 kb on + strand, within GFF3424 at 309.050 kb on + strand, within GFF3424 at 309.051 kb on - strand, within GFF3424 at 309.051 kb on - strand, within GFF3424 at 309.101 kb on + strand, within GFF3424 at 309.101 kb on + strand, within GFF3424 at 309.101 kb on + strand, within GFF3424 at 309.101 kb on + strand, within GFF3424 at 309.314 kb on + strand at 309.314 kb on + strand at 309.315 kb on - strand at 309.315 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.502 kb on + strand at 309.503 kb on - strand at 309.666 kb on + strand, within GFF3425 at 309.765 kb on + strand, within GFF3425 at 309.765 kb on + strand, within GFF3425 at 309.765 kb on + strand, within GFF3425 at 309.766 kb on - strand, within GFF3425 at 309.801 kb on + strand, within GFF3425 at 309.802 kb on - strand, within GFF3425 at 309.879 kb on + strand, within GFF3425 at 309.879 kb on + strand, within GFF3425 at 309.879 kb on + strand, within GFF3425 at 309.880 kb on - strand, within GFF3425 at 310.180 kb on - strand, within GFF3426 at 310.225 kb on - strand, within GFF3426
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 308,509 + -0.1 308,509 + +0.1 308,509 + +0.1 308,509 + -0.5 308,509 + -0.0 308,509 + -0.7 308,510 - -0.4 308,510 - +0.2 308,510 - +0.3 308,550 - -1.0 308,580 - +1.2 308,580 - +0.1 308,813 + GFF3424 0.32 +0.3 308,813 + GFF3424 0.32 -0.2 308,813 + GFF3424 0.32 -0.1 308,813 + GFF3424 0.32 +0.2 308,814 - GFF3424 0.32 -0.1 308,814 - GFF3424 0.32 +0.8 308,814 - GFF3424 0.32 -0.2 308,814 - GFF3424 0.32 -0.2 308,816 + GFF3424 0.33 +0.0 308,817 - GFF3424 0.33 -0.0 308,817 - GFF3424 0.33 -0.4 308,817 - GFF3424 0.33 +0.1 308,817 - GFF3424 0.33 -0.8 308,817 - GFF3424 0.33 -0.5 308,817 - GFF3424 0.33 -0.1 309,050 + GFF3424 0.60 +1.6 309,050 + GFF3424 0.60 +0.3 309,051 - GFF3424 0.60 +0.1 309,051 - GFF3424 0.60 +1.1 309,101 + GFF3424 0.66 +0.6 309,101 + GFF3424 0.66 -0.3 309,101 + GFF3424 0.66 -0.2 309,101 + GFF3424 0.66 +0.3 309,314 + +0.1 309,314 + +2.6 309,315 - -0.7 309,315 - -0.0 309,435 - -0.5 309,435 - +1.0 309,435 - -0.7 309,435 - +0.1 309,435 - +0.1 309,435 - +0.8 309,435 - -0.3 309,435 - -0.6 309,435 - -0.2 309,435 - +0.8 309,435 - +2.1 309,435 - -0.1 309,502 + +0.3 309,503 - -0.4 309,666 + GFF3425 0.24 +0.1 309,765 + GFF3425 0.39 -1.1 309,765 + GFF3425 0.39 -0.1 309,765 + GFF3425 0.39 +0.8 309,766 - GFF3425 0.39 +0.1 309,801 + GFF3425 0.45 +0.7 309,802 - GFF3425 0.45 +1.6 309,879 + GFF3425 0.57 +0.5 309,879 + GFF3425 0.57 +1.0 309,879 + GFF3425 0.57 +0.1 309,880 - GFF3425 0.58 +0.6 310,180 - GFF3426 0.29 +0.7 310,225 - GFF3426 0.62 +0.0
Or see this region's nucleotide sequence