Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF342

Experiment: Ying_Others16 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 2
2,101	-		GFF340	0.78	+1.1
2,101	-		GFF340	0.78	+0.5
2,349	+				+0.8
2,350	-				+0.8
2,377	-				+0.4
2,379	+				+0.9
2,379	+				+0.7
2,379	+				-0.4
2,380	-				-0.1
2,380	-				+1.1
3,004	+				-0.0
3,004	+				-2.3
3,005	-				+0.2
3,061	+				+0.4
3,061	+				+1.2
3,285	-		GFF342	0.27	+0.6
3,413	+		GFF342	0.44	+0.6
3,413	+		GFF342	0.44	+0.2
3,414	-		GFF342	0.44	+0.9
3,419	+		GFF342	0.45	+0.4
3,683	+		GFF342	0.81	-0.2
4,384	+		GFF343	0.49	+1.1
4,384	+		GFF343	0.49	+0.9
4,384	+		GFF343	0.49	+0.2
4,384	+		GFF343	0.49	+0.4
4,624	+		GFF343	0.70	+0.3
4,625	-		GFF343	0.70	-0.7