Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF321 and GFF322 are separated by 507 nucleotides GFF322 and GFF323 are separated by 56 nucleotides GFF323 and GFF324 are separated by 85 nucleotides GFF324 and GFF325 overlap by 4 nucleotides
GFF321 - hypothetical protein, at 343,919 to 344,038
GFF321
GFF322 - Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-), at 344,546 to 344,833
GFF322
GFF323 - Probable sulfite reductase, at 344,890 to 346,122
GFF323
GFF324 - FIG00537944: hypothetical protein, at 346,208 to 346,810
GFF324
GFF325 - RNA polymerase sigma-70 factor, ECF subfamily, at 346,807 to 347,340
GFF325
Position (kb) 344
345
346
347 Strain fitness (log2 ratio) -1
0
1
2 at 344.156 kb on + strand at 344.157 kb on - strand at 344.214 kb on - strand at 344.577 kb on + strand, within GFF322 at 344.578 kb on - strand, within GFF322 at 344.622 kb on + strand, within GFF322 at 344.940 kb on - strand at 345.192 kb on + strand, within GFF323 at 345.384 kb on - strand, within GFF323 at 345.557 kb on + strand, within GFF323 at 345.557 kb on + strand, within GFF323 at 345.558 kb on - strand, within GFF323 at 345.854 kb on + strand, within GFF323 at 345.855 kb on - strand, within GFF323 at 345.962 kb on + strand, within GFF323 at 345.963 kb on - strand, within GFF323 at 345.963 kb on - strand, within GFF323 at 345.963 kb on - strand, within GFF323 at 346.384 kb on - strand, within GFF324 at 346.904 kb on - strand, within GFF325 at 346.977 kb on - strand, within GFF325
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 344,156 + -0.0 344,157 - +0.8 344,214 - +0.1 344,577 + GFF322 0.11 -0.1 344,578 - GFF322 0.11 -1.0 344,622 + GFF322 0.26 +0.2 344,940 - -0.0 345,192 + GFF323 0.24 +1.9 345,384 - GFF323 0.40 -0.2 345,557 + GFF323 0.54 +0.8 345,557 + GFF323 0.54 +0.0 345,558 - GFF323 0.54 -1.3 345,854 + GFF323 0.78 +0.0 345,855 - GFF323 0.78 +0.5 345,962 + GFF323 0.87 +1.0 345,963 - GFF323 0.87 -1.2 345,963 - GFF323 0.87 +1.2 345,963 - GFF323 0.87 +0.5 346,384 - GFF324 0.29 -0.3 346,904 - GFF325 0.18 -1.4 346,977 - GFF325 0.32 -0.2
Or see this region's nucleotide sequence