Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3200

Experiment: Ying_Others16 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3198 and GFF3199 overlap by 11 nucleotidesGFF3199 and GFF3200 overlap by 4 nucleotidesGFF3200 and GFF3201 are separated by 202 nucleotidesGFF3201 and GFF3202 are separated by 98 nucleotides GFF3198 - hypothetical protein, at 86,200 to 86,739 GFF3198 GFF3199 - hypothetical protein, at 86,729 to 87,487 GFF3199 GFF3200 - hypothetical protein, at 87,484 to 87,939 GFF3200 GFF3201 - hypothetical protein, at 88,142 to 88,810 GFF3201 GFF3202 - hypothetical protein, at 88,909 to 89,529 GFF3202 Position (kb) 87 88Strain fitness (log2 ratio) -1 0 1at 86.705 kb on + strandat 86.705 kb on + strandat 86.705 kb on + strandat 86.706 kb on - strandat 87.057 kb on + strand, within GFF3199at 87.165 kb on + strand, within GFF3199at 87.597 kb on - strand, within GFF3200at 88.632 kb on + strand, within GFF3201at 88.632 kb on + strand, within GFF3201at 88.776 kb on + strandat 88.777 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2
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86,705 + -0.2
86,705 + +0.6
86,705 + -0.3
86,706 - -0.6
87,057 + GFF3199 0.43 +0.3
87,165 + GFF3199 0.57 +0.1
87,597 - GFF3200 0.25 +0.3
88,632 + GFF3201 0.73 -0.2
88,632 + GFF3201 0.73 +0.1
88,776 + -0.4
88,777 - -0.2

Or see this region's nucleotide sequence