Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3176

Experiment: Ying_Others16 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3176 and GFF3177 are separated by 110 nucleotides GFF3176 - Mobile element protein, at 56,562 to 57,077 GFF3176 GFF3177 - Mobile element protein, at 57,188 to 57,586 GFF3177 Position (kb) 56 57 58Strain fitness (log2 ratio) -1 0 1at 55.640 kb on + strandat 55.707 kb on - strandat 55.707 kb on - strandat 55.929 kb on + strandat 55.930 kb on - strandat 55.941 kb on - strandat 56.656 kb on + strand, within GFF3176at 56.711 kb on + strand, within GFF3176at 57.395 kb on - strand, within GFF3177at 57.731 kb on + strandat 58.050 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2
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55,640 + +0.9
55,707 - -0.7
55,707 - +0.3
55,929 + -0.9
55,930 - +0.3
55,941 - +1.1
56,656 + GFF3176 0.18 +1.1
56,711 + GFF3176 0.29 +0.1
57,395 - GFF3177 0.52 -0.3
57,731 + -0.1
58,050 - +0.6

Or see this region's nucleotide sequence