Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3098 and GFF3099 are separated by 41 nucleotides GFF3099 and GFF3100 are separated by 37 nucleotides GFF3100 and GFF3101 are separated by 99 nucleotides GFF3101 and GFF3102 are separated by 14 nucleotides
GFF3098 - putative exported protein, at 175,074 to 176,042
GFF3098
GFF3099 - Citrate synthase (si) (EC 2.3.3.1), at 176,084 to 176,866
GFF3099
GFF3100 - Acetyl-coenzyme A synthetase (EC 6.2.1.1), at 176,904 to 178,526
GFF3100
GFF3101 - LysR family transcriptional regulator lrhA, at 178,626 to 179,477
GFF3101
GFF3102 - Phosphoglycolate phosphatase (EC 3.1.3.18), at 179,492 to 180,229
GFF3102
Position (kb) 176
177
178
179 Strain fitness (log2 ratio) -2
-1
0
1
2 at 176.055 kb on - strand at 176.058 kb on + strand at 176.059 kb on - strand at 176.059 kb on - strand at 176.060 kb on + strand at 176.060 kb on + strand at 176.060 kb on + strand at 176.060 kb on + strand at 176.060 kb on + strand at 176.060 kb on + strand at 176.061 kb on - strand at 176.061 kb on - strand at 176.061 kb on - strand at 176.061 kb on - strand at 176.061 kb on - strand at 176.061 kb on - strand at 176.064 kb on + strand at 176.064 kb on + strand at 176.064 kb on + strand at 176.064 kb on + strand at 176.064 kb on + strand at 176.064 kb on + strand at 176.064 kb on + strand at 176.064 kb on + strand at 176.065 kb on - strand at 176.065 kb on - strand at 176.070 kb on + strand at 176.343 kb on + strand, within GFF3099 at 176.343 kb on + strand, within GFF3099 at 176.344 kb on - strand, within GFF3099 at 177.019 kb on + strand at 177.019 kb on + strand at 177.020 kb on - strand at 177.167 kb on - strand, within GFF3100 at 177.260 kb on - strand, within GFF3100 at 177.356 kb on - strand, within GFF3100 at 177.625 kb on + strand, within GFF3100 at 177.626 kb on - strand, within GFF3100 at 177.814 kb on + strand, within GFF3100 at 177.814 kb on + strand, within GFF3100 at 177.815 kb on - strand, within GFF3100 at 178.186 kb on + strand, within GFF3100 at 178.474 kb on + strand at 178.474 kb on + strand at 178.474 kb on + strand at 178.475 kb on - strand at 178.608 kb on + strand at 178.609 kb on - strand at 178.833 kb on + strand, within GFF3101 at 178.833 kb on + strand, within GFF3101 at 178.834 kb on - strand, within GFF3101 at 178.834 kb on - strand, within GFF3101 at 179.196 kb on + strand, within GFF3101 at 179.196 kb on + strand, within GFF3101 at 179.197 kb on - strand, within GFF3101 at 179.197 kb on - strand, within GFF3101 at 179.197 kb on - strand, within GFF3101 at 179.256 kb on + strand, within GFF3101 at 179.406 kb on + strand at 179.406 kb on + strand at 179.407 kb on - strand at 179.488 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 176,055 - +1.0 176,058 + +0.4 176,059 - +0.1 176,059 - +0.2 176,060 + -1.1 176,060 + -0.1 176,060 + +0.3 176,060 + -0.3 176,060 + +0.4 176,060 + +0.4 176,061 - +0.1 176,061 - -0.3 176,061 - -0.3 176,061 - +0.2 176,061 - -0.5 176,061 - -0.2 176,064 + +0.3 176,064 + +0.1 176,064 + +0.5 176,064 + +0.9 176,064 + +2.4 176,064 + -1.8 176,064 + -0.1 176,064 + +0.9 176,065 - -0.2 176,065 - -0.8 176,070 + -0.8 176,343 + GFF3099 0.33 -0.8 176,343 + GFF3099 0.33 +0.0 176,344 - GFF3099 0.33 +0.8 177,019 + -0.3 177,019 + -0.1 177,020 - -0.2 177,167 - GFF3100 0.16 +0.5 177,260 - GFF3100 0.22 +1.4 177,356 - GFF3100 0.28 +0.1 177,625 + GFF3100 0.44 -0.3 177,626 - GFF3100 0.44 +0.2 177,814 + GFF3100 0.56 +2.0 177,814 + GFF3100 0.56 +0.4 177,815 - GFF3100 0.56 -1.7 178,186 + GFF3100 0.79 +1.4 178,474 + -0.6 178,474 + +1.0 178,474 + +1.4 178,475 - -0.2 178,608 + +0.0 178,609 - +0.2 178,833 + GFF3101 0.24 -0.5 178,833 + GFF3101 0.24 +0.5 178,834 - GFF3101 0.24 +0.2 178,834 - GFF3101 0.24 +1.2 179,196 + GFF3101 0.67 +0.1 179,196 + GFF3101 0.67 -0.0 179,197 - GFF3101 0.67 +1.5 179,197 - GFF3101 0.67 -0.7 179,197 - GFF3101 0.67 -0.1 179,256 + GFF3101 0.74 +0.9 179,406 + +0.2 179,406 + +0.7 179,407 - -0.8 179,488 + +0.4
Or see this region's nucleotide sequence