Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF308

Experiment: Ying_Others16 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF307 and GFF308 are separated by 117 nucleotides GFF307 - Mobile element protein, at 328,524 to 330,059 GFF307 GFF308 - hypothetical protein, at 330,177 to 330,362 GFF308 Position (kb) 330 331Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 329.386 kb on + strand, within GFF307at 329.386 kb on + strand, within GFF307at 329.386 kb on + strand, within GFF307at 329.386 kb on + strand, within GFF307at 329.386 kb on + strand, within GFF307at 329.387 kb on - strand, within GFF307at 329.387 kb on - strand, within GFF307at 329.387 kb on - strand, within GFF307at 329.406 kb on - strand, within GFF307at 329.406 kb on - strand, within GFF307at 329.473 kb on + strand, within GFF307at 329.473 kb on + strand, within GFF307at 329.473 kb on + strand, within GFF307at 329.473 kb on + strand, within GFF307at 329.474 kb on - strand, within GFF307at 329.474 kb on - strand, within GFF307at 329.605 kb on - strand, within GFF307at 329.605 kb on - strand, within GFF307at 329.605 kb on - strand, within GFF307at 329.789 kb on - strand, within GFF307at 330.111 kb on + strandat 330.111 kb on + strandat 330.111 kb on + strandat 330.145 kb on + strandat 330.146 kb on - strandat 330.219 kb on + strand, within GFF308at 330.219 kb on + strand, within GFF308at 330.220 kb on - strand, within GFF308at 330.225 kb on + strand, within GFF308at 330.225 kb on + strand, within GFF308at 330.225 kb on + strand, within GFF308at 330.225 kb on + strand, within GFF308at 330.226 kb on - strand, within GFF308at 330.318 kb on + strand, within GFF308at 330.352 kb on - strandat 330.360 kb on + strandat 330.361 kb on - strandat 330.364 kb on + strandat 330.365 kb on - strandat 330.403 kb on + strandat 330.403 kb on + strandat 330.403 kb on + strandat 330.404 kb on - strandat 330.404 kb on - strandat 330.404 kb on - strandat 330.444 kb on - strandat 330.523 kb on + strandat 330.523 kb on + strandat 330.524 kb on - strandat 330.524 kb on - strandat 330.545 kb on + strandat 330.705 kb on + strandat 330.705 kb on + strandat 330.706 kb on - strandat 330.839 kb on + strandat 330.839 kb on + strandat 330.840 kb on - strandat 330.840 kb on - strandat 330.840 kb on - strandat 330.840 kb on - strandat 330.884 kb on + strandat 330.884 kb on + strandat 330.885 kb on - strandat 330.885 kb on - strandat 330.935 kb on + strandat 331.025 kb on - strandat 331.088 kb on + strandat 331.088 kb on + strandat 331.088 kb on + strandat 331.088 kb on + strandat 331.088 kb on + strandat 331.088 kb on + strandat 331.089 kb on - strandat 331.089 kb on - strandat 331.089 kb on - strandat 331.089 kb on - strandat 331.103 kb on + strandat 331.103 kb on + strandat 331.202 kb on + strandat 331.210 kb on + strandat 331.250 kb on - strandat 331.337 kb on + strandat 331.337 kb on + strandat 331.337 kb on + strandat 331.338 kb on - strandat 331.338 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2
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329,386 + GFF307 0.56 +0.1
329,386 + GFF307 0.56 +0.5
329,386 + GFF307 0.56 +0.5
329,386 + GFF307 0.56 -1.5
329,386 + GFF307 0.56 +0.0
329,387 - GFF307 0.56 +0.6
329,387 - GFF307 0.56 +0.5
329,387 - GFF307 0.56 +0.6
329,406 - GFF307 0.57 -0.1
329,406 - GFF307 0.57 -1.0
329,473 + GFF307 0.62 +0.3
329,473 + GFF307 0.62 -0.0
329,473 + GFF307 0.62 -0.9
329,473 + GFF307 0.62 +0.1
329,474 - GFF307 0.62 +0.0
329,474 - GFF307 0.62 -0.1
329,605 - GFF307 0.70 -3.2
329,605 - GFF307 0.70 +0.2
329,605 - GFF307 0.70 +0.0
329,789 - GFF307 0.82 +0.8
330,111 + -1.5
330,111 + -0.5
330,111 + -0.4
330,145 + +0.7
330,146 - +0.9
330,219 + GFF308 0.23 +0.4
330,219 + GFF308 0.23 +2.6
330,220 - GFF308 0.23 -0.5
330,225 + GFF308 0.26 +1.0
330,225 + GFF308 0.26 +0.1
330,225 + GFF308 0.26 +0.4
330,225 + GFF308 0.26 +0.3
330,226 - GFF308 0.26 +1.6
330,318 + GFF308 0.76 +0.7
330,352 - +1.0
330,360 + -0.1
330,361 - -0.5
330,364 + +0.0
330,365 - +0.3
330,403 + +0.1
330,403 + -0.1
330,403 + -0.2
330,404 - -0.5
330,404 - -0.1
330,404 - -0.7
330,444 - -0.2
330,523 + -0.1
330,523 + +0.3
330,524 - +0.5
330,524 - -0.2
330,545 + +1.2
330,705 + +0.8
330,705 + +0.9
330,706 - +0.9
330,839 + +0.1
330,839 + -0.1
330,840 - +0.6
330,840 - +0.4
330,840 - -0.0
330,840 - -0.1
330,884 + +0.4
330,884 + +0.8
330,885 - +0.6
330,885 - +0.6
330,935 + -2.0
331,025 - -0.1
331,088 + -0.4
331,088 + -0.1
331,088 + +0.2
331,088 + +0.5
331,088 + -0.4
331,088 + +0.8
331,089 - +0.1
331,089 - -0.2
331,089 - +0.4
331,089 - +0.6
331,103 + -0.1
331,103 + +0.5
331,202 + +0.4
331,210 + -0.6
331,250 - +1.2
331,337 + +0.2
331,337 + +0.7
331,337 + -0.3
331,338 - +0.2
331,338 - +0.1

Or see this region's nucleotide sequence