Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3072

Experiment: Ying_Others16 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3071 and GFF3072 are separated by 20 nucleotidesGFF3072 and GFF3073 overlap by 4 nucleotidesGFF3073 and GFF3074 are separated by 43 nucleotidesGFF3074 and GFF3075 overlap by 32 nucleotidesGFF3075 and GFF3076 are separated by 71 nucleotides GFF3071 - hypothetical protein, at 150,870 to 151,994 GFF3071 GFF3072 - hypothetical protein, at 152,015 to 152,404 GFF3072 GFF3073 - Integral membrane protein, at 152,401 to 152,865 GFF3073 GFF3074 - hypothetical protein, at 152,909 to 153,043 GFF3074 GFF3075 - Gfa-like protein, at 153,012 to 153,251 GFF3075 GFF3076 - putative; ORF located using Glimmer/Genemark, at 153,323 to 153,793 GFF3076 Position (kb) 152 153Strain fitness (log2 ratio) -1 0 1at 151.122 kb on + strand, within GFF3071at 151.122 kb on + strand, within GFF3071at 151.123 kb on - strand, within GFF3071at 151.123 kb on - strand, within GFF3071at 151.123 kb on - strand, within GFF3071at 151.308 kb on + strand, within GFF3071at 151.308 kb on + strand, within GFF3071at 151.309 kb on - strand, within GFF3071at 151.309 kb on - strand, within GFF3071at 151.309 kb on - strand, within GFF3071at 151.452 kb on + strand, within GFF3071at 151.453 kb on - strand, within GFF3071at 151.554 kb on + strand, within GFF3071at 151.554 kb on + strand, within GFF3071at 151.554 kb on + strand, within GFF3071at 151.555 kb on - strand, within GFF3071at 151.689 kb on + strand, within GFF3071at 151.689 kb on + strand, within GFF3071at 151.690 kb on - strand, within GFF3071at 151.690 kb on - strand, within GFF3071at 151.713 kb on + strand, within GFF3071at 151.713 kb on + strand, within GFF3071at 151.713 kb on + strand, within GFF3071at 151.714 kb on - strand, within GFF3071at 151.714 kb on - strand, within GFF3071at 151.714 kb on - strand, within GFF3071at 151.857 kb on + strand, within GFF3071at 151.857 kb on + strand, within GFF3071at 151.857 kb on + strand, within GFF3071at 151.858 kb on - strand, within GFF3071at 151.858 kb on - strand, within GFF3071at 151.932 kb on + strandat 151.933 kb on - strandat 151.933 kb on - strandat 152.148 kb on - strand, within GFF3072at 152.324 kb on + strand, within GFF3072at 152.325 kb on - strand, within GFF3072at 152.668 kb on + strand, within GFF3073at 152.669 kb on - strand, within GFF3073at 152.776 kb on + strand, within GFF3073at 152.777 kb on - strand, within GFF3073at 152.867 kb on + strandat 152.872 kb on - strandat 152.910 kb on + strandat 152.988 kb on + strand, within GFF3074at 153.075 kb on + strand, within GFF3075at 153.075 kb on + strand, within GFF3075at 153.075 kb on + strand, within GFF3075at 153.075 kb on + strand, within GFF3075at 153.076 kb on - strand, within GFF3075at 153.076 kb on - strand, within GFF3075at 153.076 kb on - strand, within GFF3075at 153.076 kb on - strand, within GFF3075at 153.076 kb on - strand, within GFF3075at 153.254 kb on + strandat 153.254 kb on + strandat 153.254 kb on + strandat 153.254 kb on + strandat 153.254 kb on + strandat 153.255 kb on - strandat 153.255 kb on - strandat 153.255 kb on - strandat 153.255 kb on - strandat 153.255 kb on - strandat 153.255 kb on - strandat 153.255 kb on - strandat 153.255 kb on - strandat 153.255 kb on - strandat 153.255 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2
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151,122 + GFF3071 0.22 -0.0
151,122 + GFF3071 0.22 -0.2
151,123 - GFF3071 0.22 -0.1
151,123 - GFF3071 0.22 -0.0
151,123 - GFF3071 0.22 -0.1
151,308 + GFF3071 0.39 +0.1
151,308 + GFF3071 0.39 +0.1
151,309 - GFF3071 0.39 -0.2
151,309 - GFF3071 0.39 +0.1
151,309 - GFF3071 0.39 +0.5
151,452 + GFF3071 0.52 -0.7
151,453 - GFF3071 0.52 +0.2
151,554 + GFF3071 0.61 +0.2
151,554 + GFF3071 0.61 +0.0
151,554 + GFF3071 0.61 -0.7
151,555 - GFF3071 0.61 -0.2
151,689 + GFF3071 0.73 +0.1
151,689 + GFF3071 0.73 +0.1
151,690 - GFF3071 0.73 -0.4
151,690 - GFF3071 0.73 +1.5
151,713 + GFF3071 0.75 -0.0
151,713 + GFF3071 0.75 +0.3
151,713 + GFF3071 0.75 +0.0
151,714 - GFF3071 0.75 -0.5
151,714 - GFF3071 0.75 +0.8
151,714 - GFF3071 0.75 -0.4
151,857 + GFF3071 0.88 +0.6
151,857 + GFF3071 0.88 +0.3
151,857 + GFF3071 0.88 -1.1
151,858 - GFF3071 0.88 +0.1
151,858 - GFF3071 0.88 +0.4
151,932 + -0.0
151,933 - -0.6
151,933 - +0.6
152,148 - GFF3072 0.34 -0.0
152,324 + GFF3072 0.79 +1.2
152,325 - GFF3072 0.79 -0.2
152,668 + GFF3073 0.57 +1.2
152,669 - GFF3073 0.58 -0.9
152,776 + GFF3073 0.81 +0.1
152,777 - GFF3073 0.81 +0.1
152,867 + +0.1
152,872 - -0.1
152,910 + +0.3
152,988 + GFF3074 0.59 -0.4
153,075 + GFF3075 0.26 -0.2
153,075 + GFF3075 0.26 -1.5
153,075 + GFF3075 0.26 +0.3
153,075 + GFF3075 0.26 +0.2
153,076 - GFF3075 0.27 -0.2
153,076 - GFF3075 0.27 +0.1
153,076 - GFF3075 0.27 +0.4
153,076 - GFF3075 0.27 -0.2
153,076 - GFF3075 0.27 -0.1
153,254 + +0.4
153,254 + +0.5
153,254 + +1.3
153,254 + +0.3
153,254 + +0.3
153,255 - +0.6
153,255 - -0.1
153,255 - -0.0
153,255 - +0.6
153,255 - +1.2
153,255 - -1.0
153,255 - -0.6
153,255 - -0.6
153,255 - -0.2
153,255 - +0.6

Or see this region's nucleotide sequence