Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3009 and GFF3010 overlap by 4 nucleotides GFF3010 and GFF3011 overlap by 4 nucleotides GFF3011 and GFF3012 are separated by 19 nucleotides
GFF3009 - 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like, at 86,754 to 87,950
GFF3009
GFF3010 - 3-oxoacyl-[ACP] synthase, at 87,947 to 88,741
GFF3010
GFF3011 - 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60), at 88,738 to 89,184
GFF3011
GFF3012 - 3-oxoacyl-[ACP] reductase (EC 1.1.1.100), at 89,204 to 89,923
GFF3012
Position (kb) 87
88
89 Strain fitness (log2 ratio) -2
-1
0
1 at 86.947 kb on - strand, within GFF3009 at 87.100 kb on - strand, within GFF3009 at 87.147 kb on + strand, within GFF3009 at 87.147 kb on + strand, within GFF3009 at 87.148 kb on - strand, within GFF3009 at 87.148 kb on - strand, within GFF3009 at 87.345 kb on + strand, within GFF3009 at 87.345 kb on + strand, within GFF3009 at 87.345 kb on + strand, within GFF3009 at 87.346 kb on - strand, within GFF3009 at 87.346 kb on - strand, within GFF3009 at 87.346 kb on - strand, within GFF3009 at 87.346 kb on - strand, within GFF3009 at 87.393 kb on + strand, within GFF3009 at 87.394 kb on - strand, within GFF3009 at 87.394 kb on - strand, within GFF3009 at 87.615 kb on + strand, within GFF3009 at 87.615 kb on + strand, within GFF3009 at 87.615 kb on + strand, within GFF3009 at 87.615 kb on + strand, within GFF3009 at 87.615 kb on + strand, within GFF3009 at 87.615 kb on + strand, within GFF3009 at 87.616 kb on - strand, within GFF3009 at 87.616 kb on - strand, within GFF3009 at 87.616 kb on - strand, within GFF3009 at 88.313 kb on + strand, within GFF3010 at 88.314 kb on - strand, within GFF3010 at 88.364 kb on + strand, within GFF3010 at 88.445 kb on + strand, within GFF3010 at 88.445 kb on + strand, within GFF3010 at 88.446 kb on - strand, within GFF3010 at 88.697 kb on + strand at 88.697 kb on + strand at 88.698 kb on - strand at 88.698 kb on - strand at 88.924 kb on + strand, within GFF3011 at 88.993 kb on + strand, within GFF3011 at 88.994 kb on - strand, within GFF3011 at 88.994 kb on - strand, within GFF3011 at 89.104 kb on + strand, within GFF3011 at 89.104 kb on + strand, within GFF3011 at 89.105 kb on - strand, within GFF3011 at 89.543 kb on + strand, within GFF3012 at 89.543 kb on + strand, within GFF3012 at 89.544 kb on - strand, within GFF3012 at 89.544 kb on - strand, within GFF3012 at 89.544 kb on - strand, within GFF3012 at 89.544 kb on - strand, within GFF3012 at 89.544 kb on - strand, within GFF3012 at 89.544 kb on - strand, within GFF3012 at 89.544 kb on - strand, within GFF3012 at 89.651 kb on + strand, within GFF3012 at 89.651 kb on + strand, within GFF3012 at 89.651 kb on + strand, within GFF3012
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 86,947 - GFF3009 0.16 -0.2 87,100 - GFF3009 0.29 +0.6 87,147 + GFF3009 0.33 -0.1 87,147 + GFF3009 0.33 -0.0 87,148 - GFF3009 0.33 -0.0 87,148 - GFF3009 0.33 +1.3 87,345 + GFF3009 0.49 -0.3 87,345 + GFF3009 0.49 -0.8 87,345 + GFF3009 0.49 +0.3 87,346 - GFF3009 0.49 +0.2 87,346 - GFF3009 0.49 +0.4 87,346 - GFF3009 0.49 +0.0 87,346 - GFF3009 0.49 -0.4 87,393 + GFF3009 0.53 +0.5 87,394 - GFF3009 0.53 -0.0 87,394 - GFF3009 0.53 +0.3 87,615 + GFF3009 0.72 -0.1 87,615 + GFF3009 0.72 +0.6 87,615 + GFF3009 0.72 -0.1 87,615 + GFF3009 0.72 -1.2 87,615 + GFF3009 0.72 -1.1 87,615 + GFF3009 0.72 -0.1 87,616 - GFF3009 0.72 -0.5 87,616 - GFF3009 0.72 -0.2 87,616 - GFF3009 0.72 +0.3 88,313 + GFF3010 0.46 -0.5 88,314 - GFF3010 0.46 +1.1 88,364 + GFF3010 0.52 +0.5 88,445 + GFF3010 0.63 +0.9 88,445 + GFF3010 0.63 -0.2 88,446 - GFF3010 0.63 +0.2 88,697 + -0.2 88,697 + +0.3 88,698 - -0.8 88,698 - -0.2 88,924 + GFF3011 0.42 -2.2 88,993 + GFF3011 0.57 +0.8 88,994 - GFF3011 0.57 +0.0 88,994 - GFF3011 0.57 -0.3 89,104 + GFF3011 0.82 -1.0 89,104 + GFF3011 0.82 +0.2 89,105 - GFF3011 0.82 -0.2 89,543 + GFF3012 0.47 -1.0 89,543 + GFF3012 0.47 -0.2 89,544 - GFF3012 0.47 -0.4 89,544 - GFF3012 0.47 +0.3 89,544 - GFF3012 0.47 +1.0 89,544 - GFF3012 0.47 +0.1 89,544 - GFF3012 0.47 -0.4 89,544 - GFF3012 0.47 -0.2 89,544 - GFF3012 0.47 +0.2 89,651 + GFF3012 0.62 +0.3 89,651 + GFF3012 0.62 -0.3 89,651 + GFF3012 0.62 +0.8
Or see this region's nucleotide sequence