Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2927

Experiment: Ying_Others16 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 2
10,405	+		GFF2926	0.36	-1.1
10,405	+		GFF2926	0.36	-0.0
10,405	+		GFF2926	0.36	+0.1
10,405	+		GFF2926	0.36	-1.0
10,405	+		GFF2926	0.36	+0.5
10,405	+		GFF2926	0.36	-1.4
10,405	+		GFF2926	0.36	-1.1
10,405	+		GFF2926	0.36	-0.5
10,405	+		GFF2926	0.36	-0.5
10,405	+		GFF2926	0.36	-0.8
10,405	+		GFF2926	0.36	+2.5
10,405	+		GFF2926	0.36	-1.3
10,405	+		GFF2926	0.36	-0.7
10,405	+		GFF2926	0.36	-0.4
10,406	-		GFF2926	0.36	-0.7
10,406	-		GFF2926	0.36	-0.3
10,406	-		GFF2926	0.36	+0.6
10,406	-		GFF2926	0.36	+0.5
10,406	-		GFF2926	0.36	-0.9
10,406	-		GFF2926	0.36	-0.7
10,406	-		GFF2926	0.36	-1.4
10,406	-		GFF2926	0.36	-0.1
10,406	-		GFF2926	0.36	-0.3
10,406	-		GFF2926	0.36	-0.7
10,406	-		GFF2926	0.36	-0.1
10,406	-		GFF2926	0.36	-0.3
10,406	-		GFF2926	0.36	-0.1
10,450	+		GFF2926	0.40	-1.5
10,522	+		GFF2926	0.46	-0.9
10,522	+		GFF2926	0.46	-1.2
10,522	+		GFF2926	0.46	-1.2
10,522	+		GFF2926	0.46	+0.2
10,522	+		GFF2926	0.46	-0.5
10,522	+		GFF2926	0.46	-0.6
10,522	+		GFF2926	0.46	-0.4
10,522	+		GFF2926	0.46	+0.2
10,522	+		GFF2926	0.46	+1.5
10,522	+		GFF2926	0.46	+0.1
10,522	+		GFF2926	0.46	-0.1
10,523	-		GFF2926	0.46	+0.2
10,523	-		GFF2926	0.46	-0.7
10,523	-		GFF2926	0.46	-0.2
10,523	-		GFF2926	0.46	-0.5
10,523	-		GFF2926	0.46	-0.4
10,642	+		GFF2926	0.55	-0.5
10,642	+		GFF2926	0.55	-0.1
10,643	-		GFF2926	0.55	-1.9
10,643	-		GFF2926	0.55	-0.4
10,643	-		GFF2926	0.55	-0.1
10,643	-		GFF2926	0.55	-0.3
10,763	-		GFF2926	0.65	-0.2
10,780	+		GFF2926	0.66	-0.5
10,780	+		GFF2926	0.66	+0.1
10,781	-		GFF2926	0.66	-0.1
10,816	+		GFF2926	0.69	-0.8
10,816	+		GFF2926	0.69	+0.4
10,816	+		GFF2926	0.69	-0.7
10,817	-		GFF2926	0.69	-0.7
10,817	-		GFF2926	0.69	-1.2
10,817	-		GFF2926	0.69	+0.2
10,853	-		GFF2926	0.72	+0.2
10,865	-		GFF2926	0.73	-0.6
10,888	+		GFF2926	0.74	-0.9
10,888	+		GFF2926	0.74	-0.2
10,888	+		GFF2926	0.74	-0.2
10,888	+		GFF2926	0.74	-0.8
10,888	+		GFF2926	0.74	-0.6
10,888	+		GFF2926	0.74	-0.2
10,888	+		GFF2926	0.74	-0.1
10,889	-		GFF2926	0.75	-0.4
10,889	-		GFF2926	0.75	-0.0
10,889	-		GFF2926	0.75	-0.7
10,889	-		GFF2926	0.75	-0.8
10,889	-		GFF2926	0.75	-0.6
10,889	-		GFF2926	0.75	-0.7
10,889	-		GFF2926	0.75	-0.5
10,889	-		GFF2926	0.75	-1.6
10,999	+		GFF2926	0.83	-1.5
10,999	+		GFF2926	0.83	-0.3
10,999	+		GFF2926	0.83	-1.2
10,999	+		GFF2926	0.83	-0.5
10,999	+		GFF2926	0.83	-0.8
10,999	+		GFF2926	0.83	+0.8
10,999	+		GFF2926	0.83	-1.2
10,999	+		GFF2926	0.83	-0.0
10,999	+		GFF2926	0.83	-1.1
11,000	-		GFF2926	0.83	-0.3
11,000	-		GFF2926	0.83	-0.4
11,000	-		GFF2926	0.83	-0.6
11,000	-		GFF2926	0.83	+0.2
11,000	-		GFF2926	0.83	+0.4
11,000	-		GFF2926	0.83	-0.6
11,000	-		GFF2926	0.83	-1.0
11,000	-		GFF2926	0.83	-0.6
11,002	+		GFF2926	0.83	+0.2
11,003	-		GFF2926	0.84	-0.6
11,003	-		GFF2926	0.84	-0.8
11,003	-		GFF2926	0.84	+0.0
11,003	-		GFF2926	0.84	-0.1
11,003	-		GFF2926	0.84	-0.8
11,003	-		GFF2926	0.84	-0.2
11,003	-		GFF2926	0.84	-0.7
11,184	+				-1.2
11,184	+				+0.2
11,184	+				-1.3
11,184	+				-1.1
11,184	+				-0.8
11,184	+				-0.7
11,184	+				-1.4
11,184	+				-0.9
11,185	-				+0.3
11,185	-				+0.2
11,192	+				+0.1
11,193	-				-0.8
11,193	-				-0.8
11,766	+		GFF2927	0.85	-0.2
11,767	-		GFF2927	0.85	+1.3
11,767	-		GFF2927	0.85	+0.9
11,783	-		GFF2927	0.88	-0.0
11,963	+				-0.3
11,963	+				+0.8
11,963	+				+0.5
11,963	+				-0.3
11,963	+				-0.2
11,963	+				+0.4
11,964	-				-0.1
12,068	+		GFF2928	0.13	+0.8
12,068	+		GFF2928	0.13	-0.2
12,069	-		GFF2928	0.13	-0.4
12,069	-		GFF2928	0.13	-0.2
12,069	-		GFF2928	0.13	-0.7
12,542	+		GFF2928	0.52	+0.6
12,542	+		GFF2928	0.52	-0.0
12,542	+		GFF2928	0.52	-0.1
12,543	-		GFF2928	0.52	+0.8
12,543	-		GFF2928	0.52	-0.8
12,543	-		GFF2928	0.52	+0.9
12,543	-		GFF2928	0.52	-0.6
12,579	-		GFF2928	0.55	-0.7
12,641	+		GFF2928	0.60	-0.4
12,641	+		GFF2928	0.60	-0.6
12,641	+		GFF2928	0.60	-1.2
12,641	+		GFF2928	0.60	+0.0
12,642	-		GFF2928	0.60	-0.4
12,642	-		GFF2928	0.60	+0.1
12,642	-		GFF2928	0.60	+0.1
12,643	+		GFF2928	0.60	+0.1
12,643	+		GFF2928	0.60	+0.0
12,644	-		GFF2928	0.60	-0.5
12,644	-		GFF2928	0.60	-0.1
12,644	-		GFF2928	0.60	+0.1