Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2895 and GFF2896 overlap by 4 nucleotides GFF2896 and GFF2897 are separated by 1 nucleotides GFF2897 and GFF2898 overlap by 4 nucleotides
GFF2895 - Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases, at 482,975 to 484,642
GFF2895
GFF2896 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 484,639 to 485,835
GFF2896
GFF2897 - Enoyl-CoA hydratase (EC 4.2.1.17), at 485,837 to 486,694
GFF2897
GFF2898 - Transcriptional regulator, MarR family, at 486,691 to 487,176
GFF2898
Position (kb) 484
485
486 Strain fitness (log2 ratio) -1
0
1
2 at 483.730 kb on - strand, within GFF2895 at 483.730 kb on - strand, within GFF2895 at 483.747 kb on + strand, within GFF2895 at 483.802 kb on - strand, within GFF2895 at 483.819 kb on + strand, within GFF2895 at 483.819 kb on + strand, within GFF2895 at 483.819 kb on + strand, within GFF2895 at 483.820 kb on - strand, within GFF2895 at 483.820 kb on - strand, within GFF2895 at 483.820 kb on - strand, within GFF2895 at 484.126 kb on - strand, within GFF2895 at 484.431 kb on + strand, within GFF2895 at 484.432 kb on - strand, within GFF2895 at 484.432 kb on - strand, within GFF2895 at 484.694 kb on + strand at 484.844 kb on + strand, within GFF2896 at 484.901 kb on + strand, within GFF2896 at 484.902 kb on - strand, within GFF2896 at 485.297 kb on + strand, within GFF2896 at 485.465 kb on + strand, within GFF2896 at 485.883 kb on + strand at 485.884 kb on - strand at 486.535 kb on - strand, within GFF2897 at 486.535 kb on - strand, within GFF2897
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 483,730 - GFF2895 0.45 +1.5 483,730 - GFF2895 0.45 +0.3 483,747 + GFF2895 0.46 +0.1 483,802 - GFF2895 0.50 -0.2 483,819 + GFF2895 0.51 -0.3 483,819 + GFF2895 0.51 +0.0 483,819 + GFF2895 0.51 -0.5 483,820 - GFF2895 0.51 -0.2 483,820 - GFF2895 0.51 +0.8 483,820 - GFF2895 0.51 -0.6 484,126 - GFF2895 0.69 +0.1 484,431 + GFF2895 0.87 -1.0 484,432 - GFF2895 0.87 +0.0 484,432 - GFF2895 0.87 -0.2 484,694 + +0.1 484,844 + GFF2896 0.17 +0.7 484,901 + GFF2896 0.22 +0.8 484,902 - GFF2896 0.22 +0.5 485,297 + GFF2896 0.55 +1.9 485,465 + GFF2896 0.69 -0.1 485,883 + -1.6 485,884 - +0.2 486,535 - GFF2897 0.81 -0.2 486,535 - GFF2897 0.81 -0.5
Or see this region's nucleotide sequence