Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2803 and GFF2804 are separated by 34 nucleotides GFF2804 and GFF2805 overlap by 4 nucleotides GFF2805 and GFF2806 are separated by 147 nucleotides
GFF2803 - Hydrogen peroxide-inducible genes activator, at 402,321 to 403,280
GFF2803
GFF2804 - Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1), at 403,315 to 403,821
GFF2804
GFF2805 - 4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39), at 403,818 to 404,672
GFF2805
GFF2806 - Pyrroline-5-carboxylate reductase (EC 1.5.1.2), at 404,820 to 405,650
GFF2806
Position (kb) 403
404 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 402.342 kb on + strand at 402.342 kb on + strand at 402.342 kb on + strand at 402.343 kb on - strand at 402.343 kb on - strand at 402.343 kb on - strand at 402.615 kb on + strand, within GFF2803 at 402.615 kb on + strand, within GFF2803 at 402.616 kb on - strand, within GFF2803 at 402.616 kb on - strand, within GFF2803 at 402.616 kb on - strand, within GFF2803 at 402.616 kb on - strand, within GFF2803 at 402.630 kb on + strand, within GFF2803 at 402.630 kb on + strand, within GFF2803 at 402.630 kb on + strand, within GFF2803 at 402.802 kb on - strand, within GFF2803 at 403.131 kb on + strand, within GFF2803 at 403.131 kb on + strand, within GFF2803 at 403.132 kb on - strand, within GFF2803 at 403.132 kb on - strand, within GFF2803 at 403.210 kb on - strand at 403.242 kb on + strand at 403.242 kb on + strand at 403.242 kb on + strand at 403.243 kb on - strand at 403.243 kb on - strand at 403.243 kb on - strand at 403.243 kb on - strand at 403.243 kb on - strand at 403.278 kb on + strand at 403.278 kb on + strand at 403.279 kb on - strand at 403.423 kb on + strand, within GFF2804 at 403.423 kb on + strand, within GFF2804 at 403.423 kb on + strand, within GFF2804 at 403.423 kb on + strand, within GFF2804 at 403.423 kb on + strand, within GFF2804 at 403.423 kb on + strand, within GFF2804 at 403.423 kb on + strand, within GFF2804 at 403.424 kb on - strand, within GFF2804 at 403.424 kb on - strand, within GFF2804 at 403.424 kb on - strand, within GFF2804 at 403.424 kb on - strand, within GFF2804 at 403.424 kb on - strand, within GFF2804 at 403.424 kb on - strand, within GFF2804 at 403.424 kb on - strand, within GFF2804 at 403.424 kb on - strand, within GFF2804 at 403.432 kb on + strand, within GFF2804 at 403.433 kb on - strand, within GFF2804 at 403.433 kb on - strand, within GFF2804 at 403.433 kb on - strand, within GFF2804 at 403.511 kb on - strand, within GFF2804 at 403.511 kb on - strand, within GFF2804 at 403.586 kb on - strand, within GFF2804 at 403.586 kb on - strand, within GFF2804 at 403.586 kb on - strand, within GFF2804 at 404.814 kb on + strand at 404.814 kb on + strand at 404.814 kb on + strand at 404.814 kb on + strand at 404.815 kb on - strand at 404.815 kb on - strand at 404.821 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 402,342 + -1.8 402,342 + -1.1 402,342 + -1.8 402,343 - -1.2 402,343 - -0.1 402,343 - -0.6 402,615 + GFF2803 0.31 -0.7 402,615 + GFF2803 0.31 -0.7 402,616 - GFF2803 0.31 -0.2 402,616 - GFF2803 0.31 +0.1 402,616 - GFF2803 0.31 -0.9 402,616 - GFF2803 0.31 -0.6 402,630 + GFF2803 0.32 -1.6 402,630 + GFF2803 0.32 +0.2 402,630 + GFF2803 0.32 -0.5 402,802 - GFF2803 0.50 -0.5 403,131 + GFF2803 0.84 +0.2 403,131 + GFF2803 0.84 -0.1 403,132 - GFF2803 0.84 +0.1 403,132 - GFF2803 0.84 -1.3 403,210 - +0.3 403,242 + +0.5 403,242 + -0.9 403,242 + +0.1 403,243 - +0.4 403,243 - -0.3 403,243 - -0.2 403,243 - +0.9 403,243 - +1.2 403,278 + +0.3 403,278 + +0.3 403,279 - +0.4 403,423 + GFF2804 0.21 +0.8 403,423 + GFF2804 0.21 -0.7 403,423 + GFF2804 0.21 -1.2 403,423 + GFF2804 0.21 +0.1 403,423 + GFF2804 0.21 -0.4 403,423 + GFF2804 0.21 -0.9 403,423 + GFF2804 0.21 -0.9 403,424 - GFF2804 0.21 -0.8 403,424 - GFF2804 0.21 -0.2 403,424 - GFF2804 0.21 -1.1 403,424 - GFF2804 0.21 -0.4 403,424 - GFF2804 0.21 -0.3 403,424 - GFF2804 0.21 -0.7 403,424 - GFF2804 0.21 -0.6 403,424 - GFF2804 0.21 -0.5 403,432 + GFF2804 0.23 -0.3 403,433 - GFF2804 0.23 -0.2 403,433 - GFF2804 0.23 -1.5 403,433 - GFF2804 0.23 -0.6 403,511 - GFF2804 0.39 -2.0 403,511 - GFF2804 0.39 -1.1 403,586 - GFF2804 0.53 -2.6 403,586 - GFF2804 0.53 -0.9 403,586 - GFF2804 0.53 -3.4 404,814 + +0.3 404,814 + +0.1 404,814 + +0.2 404,814 + -0.1 404,815 - +0.1 404,815 - -0.8 404,821 + +0.6
Or see this region's nucleotide sequence